Sequences of primers developed in this study to amplify specifically the ITS region of fungal Molecular Operational Taxonomic Units (MOTU) detected in two focal ant-plant symbioses.

Hirokazu Toju (316083)
Akifumi S. Tanabe (316084)
Satoshi Yamamoto (316085)
Hirotoshi Sato (117839)

February 2013

The percentage of fungal LTUs amplified by ecoPCR is shown for each primer. In each analysis, ...

Organization of fungal rDNA locus and regions targeted by oligonucleotide probe and primers.

Timothy Heisel (695138)
Heather Podgorski (695139)
Christopher M. Staley (695140)
Dan Knights (103804)
Michael J. Sadowsky (147063)
Cheryl A. Gale (695141)

February 2015

Primers UNI1, UNI2, and Cspecies, and probe are used in the qPCR strategy. Primers Fseq and Rseq ...

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-form Sthenoteuthis oualaniensis.

Lulu Yan (3229812)
Chao Zhao (253684)
Jun Zhang (48506)
Lihua Qiu (178071)
Zuozhi Chen (5391248)

June 2018

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-for...

Selection and Experimental Evaluation of Universal Primers to Study the Fungal Microbiome of Higher Plants

Silvia Scibetta
Leonardo Schena
Ahmed Abdelfattah
Sonia Pangallo
Santa O. Cacciola

February 2019

The impact of primer choice on results of metabarcoding studies was experimentally evaluated by anal...

Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues

Chloé Viotti (17902062)
Michel Chalot (73961)
Peter G. Kennedy (9253419)
François Maillard (17902065)
Sylvain Santoni (67445)
Damien Blaudez (73958)
Coralie Bertheau (3309690)

February 2024

High-throughput sequencing has become a prominent tool to assess plant-associated microbial diversit...

In Silico Study Suggesting the Bias of Primers Choice in the Molecular Identification of Fungal Aerosols

Mbareche, Hamza
Veillette, Marc
Bilodeau, Guillaume J.

February 2021

This paper presents an in silico analysis to assess the current state of the fungal UNITE database i...

Primers used in this study.

Hirokazu Toju (316083)
Akifumi S. Tanabe (316084)
Satoshi Yamamoto (316085)
Hirotoshi Sato (117839)

February 2013

Both primers whose coverage of fungal taxa was evaluated and those used only for subset construct...

Number of fungal samples in which the different MOTUs were detected using sequencing of the ITS region (ITS1, 5.8S, ITS2) of ribosomal DNA.

Rumsaïs Blatrix (437768)
Sarah Debaud (437769)
Alex Salas-Lopez (437770)
Céline Born (437771)
Laure Benoit (415550)
Doyle B. McKey (437772)
Christiane Attéké (437773)
Champlain Djiéto-Lordon (437774)

July 2013

aPCR was performed directly on the fungal patch using fungal universal primers ITS1f and ITS4, an...

H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples

Hirokazu Toju
Akifumi S. Tanabe
Satoshi Yamamoto
Hirotoshi Sato

August 2016

The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as decompos...

Primers used for the amplification of the LSU and ITS/5.8 regions of rDNA from clonal cultures of Pseudo-nitzschia established in this study.

Penelope A. Ajani (5095130)
Arjun Verma (5095133)
Malwenn Lassudrie (5095136)
Martina A. Doblin (464908)
Shauna A. Murray (24871)

April 2018

Primers used for the amplification of the LSU and ITS/5.8 regions of rDNA from clonal cultures of...

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

Toju, Hirokazu
Tanabe, Akifumi S
Yamamoto, Satoshi
Sato, Hirotoshi

July 2012

The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as decompos...

Primer sequences used for quantitative PCR for both A. aspera and Symbiodinium clade C1.

William Leggat (126445)
Francois Seneca (162063)
Kenneth Wasmund (341360)
Lubna Ukani (73483)
David Yellowlees (126442)
Tracy D. Ainsworth (341361)

February 2013

Primer sequences used for quantitative PCR for both A. aspera and Symbiodinium clad...

Primer sets for DNA barcoding of plant pathogenic fungi

Balendres, Mark Angelo

August 2022

This article outlines the primer sets used for polymerase chain reaction for DNA barcoding of plant ...

Repeated evolution of fungal cultivar specificity in independently evolved ant-plant-fungus symbioses.

Rumsaïs Blatrix
Sarah Debaud
Alex Salas-Lopez
Céline Born
Laure Benoit
Doyle B McKey
Christiane Attéké
Champlain Djiéto-Lordon

Some tropical plant species possess hollow structures (domatia) occupied by ants that protect the pl...

Target sequence amplification patterns for each of six Ophidiomyces ophidiicola clades/clonal lineages.

Ellen Haynes (6832487)
Jeffrey Lorch (16747930)
Matthew C. Allender (7871711)

August 2023

Target sequence amplification patterns for each of six Ophidiomyces ophidiicola clades/clonal lineag...

Coverage of fungal ITS primers.

Hirokazu Toju (316083)
Akifumi S. Tanabe (316084)
Satoshi Yamamoto (316085)
Hirotoshi Sato (117839)

February 2013

The percentage of fungal LTUs amplified by ecoPCR is shown for each primer. In each analysis, ...

Organization of fungal rDNA locus and regions targeted by oligonucleotide probe and primers.

Timothy Heisel (695138)
Heather Podgorski (695139)
Christopher M. Staley (695140)
Dan Knights (103804)
Michael J. Sadowsky (147063)
Cheryl A. Gale (695141)

February 2015

Primers UNI1, UNI2, and Cspecies, and probe are used in the qPCR strategy. Primers Fseq and Rseq ...

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-form Sthenoteuthis oualaniensis.

Lulu Yan (3229812)
Chao Zhao (253684)
Jun Zhang (48506)
Lihua Qiu (178071)
Zuozhi Chen (5391248)

June 2018

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-for...

Selection and Experimental Evaluation of Universal Primers to Study the Fungal Microbiome of Higher Plants

Silvia Scibetta
Leonardo Schena
Ahmed Abdelfattah
Sonia Pangallo
Santa O. Cacciola

February 2019

The impact of primer choice on results of metabarcoding studies was experimentally evaluated by anal...

Primer pairs, PCR conditions, and peptide nucleic acid clamps affect fungal diversity assessment from plant root tissues

Chloé Viotti (17902062)
Michel Chalot (73961)
Peter G. Kennedy (9253419)
François Maillard (17902065)
Sylvain Santoni (67445)
Damien Blaudez (73958)
Coralie Bertheau (3309690)

February 2024

High-throughput sequencing has become a prominent tool to assess plant-associated microbial diversit...

In Silico Study Suggesting the Bias of Primers Choice in the Molecular Identification of Fungal Aerosols

Mbareche, Hamza
Veillette, Marc
Bilodeau, Guillaume J.

February 2021

This paper presents an in silico analysis to assess the current state of the fungal UNITE database i...

Primers used in this study.

Hirokazu Toju (316083)
Akifumi S. Tanabe (316084)
Satoshi Yamamoto (316085)
Hirotoshi Sato (117839)

February 2013

Both primers whose coverage of fungal taxa was evaluated and those used only for subset construct...

Number of fungal samples in which the different MOTUs were detected using sequencing of the ITS region (ITS1, 5.8S, ITS2) of ribosomal DNA.

Rumsaïs Blatrix (437768)
Sarah Debaud (437769)
Alex Salas-Lopez (437770)
Céline Born (437771)
Laure Benoit (415550)
Doyle B. McKey (437772)
Christiane Attéké (437773)
Champlain Djiéto-Lordon (437774)

July 2013

aPCR was performed directly on the fungal patch using fungal universal primers ITS1f and ITS4, an...

H (2012) High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples

Hirokazu Toju
Akifumi S. Tanabe
Satoshi Yamamoto
Hirotoshi Sato

August 2016

The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as decompos...

Primers used for the amplification of the LSU and ITS/5.8 regions of rDNA from clonal cultures of Pseudo-nitzschia established in this study.

Penelope A. Ajani (5095130)
Arjun Verma (5095133)
Malwenn Lassudrie (5095136)
Martina A. Doblin (464908)
Shauna A. Murray (24871)

April 2018

Primers used for the amplification of the LSU and ITS/5.8 regions of rDNA from clonal cultures of...

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

Toju, Hirokazu
Tanabe, Akifumi S
Yamamoto, Satoshi
Sato, Hirotoshi

July 2012

The kingdom Fungi is estimated to include 1.5 million or more species, playing key roles as decompos...

Primer sequences used for quantitative PCR for both A. aspera and Symbiodinium clade C1.

William Leggat (126445)
Francois Seneca (162063)
Kenneth Wasmund (341360)
Lubna Ukani (73483)
David Yellowlees (126442)
Tracy D. Ainsworth (341361)

February 2013

Primer sequences used for quantitative PCR for both A. aspera and Symbiodinium clad...

Primer sets for DNA barcoding of plant pathogenic fungi

Balendres, Mark Angelo

August 2022

This article outlines the primer sets used for polymerase chain reaction for DNA barcoding of plant ...

Repeated evolution of fungal cultivar specificity in independently evolved ant-plant-fungus symbioses.

Rumsaïs Blatrix
Sarah Debaud
Alex Salas-Lopez
Céline Born
Laure Benoit
Doyle B McKey
Christiane Attéké
Champlain Djiéto-Lordon

Some tropical plant species possess hollow structures (domatia) occupied by ants that protect the pl...

Target sequence amplification patterns for each of six Ophidiomyces ophidiicola clades/clonal lineages.

Ellen Haynes (6832487)
Jeffrey Lorch (16747930)
Matthew C. Allender (7871711)

August 2023

Target sequence amplification patterns for each of six Ophidiomyces ophidiicola clades/clonal lineag...

Coverage of fungal ITS primers.

Hirokazu Toju (316083)
Akifumi S. Tanabe (316084)
Satoshi Yamamoto (316085)
Hirotoshi Sato (117839)

February 2013

The percentage of fungal LTUs amplified by ecoPCR is shown for each primer. In each analysis, ...

Organization of fungal rDNA locus and regions targeted by oligonucleotide probe and primers.

Timothy Heisel (695138)
Heather Podgorski (695139)
Christopher M. Staley (695140)
Dan Knights (103804)
Michael J. Sadowsky (147063)
Cheryl A. Gale (695141)

February 2015

Primers UNI1, UNI2, and Cspecies, and probe are used in the qPCR strategy. Primers Fseq and Rseq ...

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-form Sthenoteuthis oualaniensis.

Lulu Yan (3229812)
Chao Zhao (253684)
Jun Zhang (48506)
Lihua Qiu (178071)
Zuozhi Chen (5391248)

June 2018

Primer sequences for amplification of target and reference genes in two dwarf-form and medium-for...

Sequences of primers developed in this study to amplify specifically the ITS region of fungal Molecular Operational Taxonomic Units (MOTU) detected in two focal ant-plant symbioses.

Abstract

Extracted data

Sequences of primers developed in this study to amplify specifically the ITS region of fungal Molecular Operational Taxonomic Units (MOTU) detected in two focal ant-plant symbioses.

Abstract

Extracted data

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