Results of the relationship between coral cover at Ningaloo Reef and explanatory variables using general linear mixed-effects model comparison based on Akaike’s information criterion (AICc) corrected for small sample sizes.

Regression statistics showing the strength and significance of linear relationships between species richness and a) Generic richness measured on a belt transect; b) Generic richness measured on a point intercept transect; and c) Percent live hard coral cover.

Zoe T. Richards (270614)
Jean-Paul A. Hobbs (117770)

January 2014

= 0.05; = 0.005; = 0.0005.Strong (>0.70) and highly significant (p<0.0005) ...

A comparison of proxy performance in coral biodiversity monitoring

Richards, Zoe

January 2013

The productivity and health of coral reef habitat is diminishing worldwide; however, the effect that...

Effect of reef flat geometry.

James L. Falter (105983)
Ryan J. Lowe (105987)
Zhenlin Zhang (105991)
Malcolm McCulloch (105995)

January 2013

Amplitude of diurnal pCO2 variation at the backreef versus based on simulatio...

Model ranking results of relationship between coral cover over time for sub-regions at Ningaloo Reef.

Conrad W. Speed (401262)
Russ C. Babcock (438723)
Kevin P. Bancroft (438724)
Lynnath E. Beckley (310627)
Lynda M. Bellchambers (172109)
Martial Depczynski (283952)
Stuart N. Field (112320)
Kim J. Friedman (293978)
James P. Gilmour (293979)
Jean-Paul A. Hobbs (117770)
Halina T. Kobryn (437965)
James A. Y. Moore (112322)
Christopher D. Nutt (438725)
George Shedrawi (112323)
Damian P. Thomson (293983)
Shaun K. Wilson (225620)

July 2013

For each of the models contrasted, degrees of freedom (df), maximum log-likelihood (-LL), ...

Linear mixed effects model results (coefficients with one standard error) for reef fish abundances relative to mangrove coverage, human population density, and latitude.

Joseph E. Serafy (822056)
Geoffrey S. Shideler (822057)
Rafael J. Araújo (822058)
Ivan Nagelkerken (320270)

November 2015

Shown are final models of best fit as determined by Akaike Information Criterion (AIC). “Mangrove...

Linear mixed-effects models showing the relationships between grouped taxon abundances and environmental conditions in the grazing halos of Haron Island Lagoon.

Quinn R. Ollivier (4919755)
Edward Hammill (4919758)
David J. Booth (225554)
Elizabeth M. P. Madin (180610)
Charles Hinchliffe (4919752)
Alastair R. Harborne (216187)
Catherine E. Lovelock (264003)
Peter I. Macreadie (280451)
Trisha B. Atwood (3314448)

March 2018

Patch reef is treated as a random factor within the model to account for between site dissimilari...

Linear mixed-effects models showing environmental patterns in the grazing halos of Heron Island lagoon.

Quinn R. Ollivier (4919755)
Edward Hammill (4919758)
David J. Booth (225554)
Elizabeth M. P. Madin (180610)
Charles Hinchliffe (4919752)
Alastair R. Harborne (216187)
Catherine E. Lovelock (264003)
Peter I. Macreadie (280451)
Trisha B. Atwood (3314448)

March 2018

Patch reef is treated as a random factor within the model to account for between site dissimilari...

Differences in hard coral cover, habitat complexity, total species richness of fishes and species richness of eight fish families and five broad functional groups for each of the three treatments (Major Decline, Minor Decline and Control).

Michael J. Emslie (619061)
Alistair J. Cheal (619062)
Kerryn A. Johns (227831)

August 2014

Data are average effect sizes from generalized linear mixed effects model expressed as a per cent...

Sources of variation in coral cover, structural complexity and coral genus richness among zones and exposure.

Nicholas A. J. Graham (115235)
Karen M. Chong-Seng (148516)
Cindy Huchery (457309)
Fraser A. Januchowski-Hartley (346401)
Kirsty L. Nash (591040)

July 2014

Hierarchical model results assessing: exposure (exposed, sheltered); and zone (flat, crest, slope...

Model selection of GLMMs for % bleaching with region, CRW’s 5 km Degree Heating Week (DHW), depth, and relative coral community susceptibility score as fixed effects and site as a random effects.

Courtney S. Couch (4474405)
John H. R. Burns (337081)
Gang Liu (81776)
Kanoelani Steward (4474399)
Tiffany Nicole Gutlay (4474402)
Jean Kenyon (219147)
C. Mark Eakin (138582)
Randall K. Kosaki (3158076)

September 2017

K: number of parameters in the model; AICc: the corrected Aikaike Information Criterion; ΔAICc: d...

Top mixed-effects hierarchical linear models for Western Indian Ocean coral communities.

Timothy R. McClanahan (166326)
Mebrahtu Ateweberhan (210309)
Emily S. Darling (138580)
Nicholas A. J. Graham (115235)
Nyawira A. Muthiga (549238)

April 2014

The original model for each response contained all main effects and their two-way interactions. G...

Comparison of the procedure based on multigene normalization followed by single-model MCMC analysis (“classic” model) to full Bayesian models.

Mikhail V. Matz (51701)
Rachel M. Wright (447448)
James G. Scott (447449)

August 2013

(a) Point-estimates and credible intervals for the effects of stress in coral dataset inferred by...

Generalised Linear Models ranking results of number of grey reef sharks detected per hourly bin (Indivis as response variable) versus the following explanatory variables: months (Month), phase of the diel cycle (Day/Night), phase of the tidal cycle (Low, Incoming, High, Outgoing) (Tide).

Gabriel M. S. Vianna (401261)
Mark G. Meekan (111192)
Jessica J. Meeuwig (118705)
Conrad W. Speed (401262)

April 2013

Models compared based on Akaike's Information Criteria corrected for small samples (AICc). LL: Ma...

Percent cover estimation differences.

Oscar Beijbom (767233)
Peter J. Edmunds (208099)
Chris Roelfsema (694353)
Jennifer Smith (172056)
David I. Kline (171988)
Benjamin P. Neal (767234)
Matthew J. Dunlap (767235)
Vincent Moriarty (767236)
Tung-Yung Fan (199274)
Chih-Jui Tan (767237)
Stephen Chan (346637)
Tali Treibitz (759944)
Anthony Gamst (3255549)
B. Greg Mitchell (370485)
David Kriegman (767238)

July 2015

Differences in percent cover estimates between the Host and Visiting experts as well as the Abund...

Summary statistics of a random-effects model for overall comparison of juvenile (1–10 cm, TL) fish densities in seagrass beds (SG), mangroves (MG), and coral reefs (RF).

Mathias M. Igulu (680649)
Ivan Nagelkerken (320270)
Martijn Dorenbosch (476572)
Monique G. G. Grol (320271)
Alastair R. Harborne (216187)
Ismael A. Kimirei (421059)
Peter J. Mumby (138596)
Andrew D. Olds (680650)
Yunus D. Mgaya (421060)

December 2014

Values indicate weighted mean effect size (d+), 95% confidence intervals (CI), ...

Regression statistics showing the strength and significance of linear relationships between species richness and a) Generic richness measured on a belt transect; b) Generic richness measured on a point intercept transect; and c) Percent live hard coral cover.

Zoe T. Richards (270614)
Jean-Paul A. Hobbs (117770)

January 2014

= 0.05; = 0.005; = 0.0005.Strong (>0.70) and highly significant (p<0.0005) ...

A comparison of proxy performance in coral biodiversity monitoring

Richards, Zoe

January 2013

The productivity and health of coral reef habitat is diminishing worldwide; however, the effect that...

Effect of reef flat geometry.

James L. Falter (105983)
Ryan J. Lowe (105987)
Zhenlin Zhang (105991)
Malcolm McCulloch (105995)

January 2013

Amplitude of diurnal pCO2 variation at the backreef versus based on simulatio...

Model ranking results of relationship between coral cover over time for sub-regions at Ningaloo Reef.

Conrad W. Speed (401262)
Russ C. Babcock (438723)
Kevin P. Bancroft (438724)
Lynnath E. Beckley (310627)
Lynda M. Bellchambers (172109)
Martial Depczynski (283952)
Stuart N. Field (112320)
Kim J. Friedman (293978)
James P. Gilmour (293979)
Jean-Paul A. Hobbs (117770)
Halina T. Kobryn (437965)
James A. Y. Moore (112322)
Christopher D. Nutt (438725)
George Shedrawi (112323)
Damian P. Thomson (293983)
Shaun K. Wilson (225620)

July 2013

For each of the models contrasted, degrees of freedom (df), maximum log-likelihood (-LL), ...

Linear mixed effects model results (coefficients with one standard error) for reef fish abundances relative to mangrove coverage, human population density, and latitude.

Joseph E. Serafy (822056)
Geoffrey S. Shideler (822057)
Rafael J. Araújo (822058)
Ivan Nagelkerken (320270)

November 2015

Shown are final models of best fit as determined by Akaike Information Criterion (AIC). “Mangrove...

Linear mixed-effects models showing the relationships between grouped taxon abundances and environmental conditions in the grazing halos of Haron Island Lagoon.

Quinn R. Ollivier (4919755)
Edward Hammill (4919758)
David J. Booth (225554)
Elizabeth M. P. Madin (180610)
Charles Hinchliffe (4919752)
Alastair R. Harborne (216187)
Catherine E. Lovelock (264003)
Peter I. Macreadie (280451)
Trisha B. Atwood (3314448)

March 2018

Patch reef is treated as a random factor within the model to account for between site dissimilari...

Linear mixed-effects models showing environmental patterns in the grazing halos of Heron Island lagoon.

Quinn R. Ollivier (4919755)
Edward Hammill (4919758)
David J. Booth (225554)
Elizabeth M. P. Madin (180610)
Charles Hinchliffe (4919752)
Alastair R. Harborne (216187)
Catherine E. Lovelock (264003)
Peter I. Macreadie (280451)
Trisha B. Atwood (3314448)

March 2018

Patch reef is treated as a random factor within the model to account for between site dissimilari...

Differences in hard coral cover, habitat complexity, total species richness of fishes and species richness of eight fish families and five broad functional groups for each of the three treatments (Major Decline, Minor Decline and Control).

Michael J. Emslie (619061)
Alistair J. Cheal (619062)
Kerryn A. Johns (227831)

August 2014

Data are average effect sizes from generalized linear mixed effects model expressed as a per cent...

Sources of variation in coral cover, structural complexity and coral genus richness among zones and exposure.

Nicholas A. J. Graham (115235)
Karen M. Chong-Seng (148516)
Cindy Huchery (457309)
Fraser A. Januchowski-Hartley (346401)
Kirsty L. Nash (591040)

July 2014

Hierarchical model results assessing: exposure (exposed, sheltered); and zone (flat, crest, slope...

Model selection of GLMMs for % bleaching with region, CRW’s 5 km Degree Heating Week (DHW), depth, and relative coral community susceptibility score as fixed effects and site as a random effects.

Courtney S. Couch (4474405)
John H. R. Burns (337081)
Gang Liu (81776)
Kanoelani Steward (4474399)
Tiffany Nicole Gutlay (4474402)
Jean Kenyon (219147)
C. Mark Eakin (138582)
Randall K. Kosaki (3158076)

September 2017

K: number of parameters in the model; AICc: the corrected Aikaike Information Criterion; ΔAICc: d...

Top mixed-effects hierarchical linear models for Western Indian Ocean coral communities.

Timothy R. McClanahan (166326)
Mebrahtu Ateweberhan (210309)
Emily S. Darling (138580)
Nicholas A. J. Graham (115235)
Nyawira A. Muthiga (549238)

April 2014

The original model for each response contained all main effects and their two-way interactions. G...

Comparison of the procedure based on multigene normalization followed by single-model MCMC analysis (“classic” model) to full Bayesian models.

Mikhail V. Matz (51701)
Rachel M. Wright (447448)
James G. Scott (447449)

August 2013

(a) Point-estimates and credible intervals for the effects of stress in coral dataset inferred by...

Generalised Linear Models ranking results of number of grey reef sharks detected per hourly bin (Indivis as response variable) versus the following explanatory variables: months (Month), phase of the diel cycle (Day/Night), phase of the tidal cycle (Low, Incoming, High, Outgoing) (Tide).

Gabriel M. S. Vianna (401261)
Mark G. Meekan (111192)
Jessica J. Meeuwig (118705)
Conrad W. Speed (401262)

April 2013

Models compared based on Akaike's Information Criteria corrected for small samples (AICc). LL: Ma...

Percent cover estimation differences.

Oscar Beijbom (767233)
Peter J. Edmunds (208099)
Chris Roelfsema (694353)
Jennifer Smith (172056)
David I. Kline (171988)
Benjamin P. Neal (767234)
Matthew J. Dunlap (767235)
Vincent Moriarty (767236)
Tung-Yung Fan (199274)
Chih-Jui Tan (767237)
Stephen Chan (346637)
Tali Treibitz (759944)
Anthony Gamst (3255549)
B. Greg Mitchell (370485)
David Kriegman (767238)

July 2015

Differences in percent cover estimates between the Host and Visiting experts as well as the Abund...

Summary statistics of a random-effects model for overall comparison of juvenile (1–10 cm, TL) fish densities in seagrass beds (SG), mangroves (MG), and coral reefs (RF).

Mathias M. Igulu (680649)
Ivan Nagelkerken (320270)
Martijn Dorenbosch (476572)
Monique G. G. Grol (320271)
Alastair R. Harborne (216187)
Ismael A. Kimirei (421059)
Peter J. Mumby (138596)
Andrew D. Olds (680650)
Yunus D. Mgaya (421060)

December 2014

Values indicate weighted mean effect size (d+), 95% confidence intervals (CI), ...

Regression statistics showing the strength and significance of linear relationships between species richness and a) Generic richness measured on a belt transect; b) Generic richness measured on a point intercept transect; and c) Percent live hard coral cover.

Zoe T. Richards (270614)
Jean-Paul A. Hobbs (117770)

January 2014

= 0.05; = 0.005; = 0.0005.Strong (>0.70) and highly significant (p<0.0005) ...

A comparison of proxy performance in coral biodiversity monitoring

Richards, Zoe

January 2013

The productivity and health of coral reef habitat is diminishing worldwide; however, the effect that...

Effect of reef flat geometry.

James L. Falter (105983)
Ryan J. Lowe (105987)
Zhenlin Zhang (105991)
Malcolm McCulloch (105995)

January 2013

Amplitude of diurnal pCO2 variation at the backreef versus based on simulatio...

Results of the relationship between coral cover at Ningaloo Reef and explanatory variables using general linear mixed-effects model comparison based on Akaike’s information criterion (AIC<i><sub>c</sub></i>) corrected for small sample sizes.

Abstract

Extracted data

Results of the relationship between coral cover at Ningaloo Reef and explanatory variables using general linear mixed-effects model comparison based on Akaike’s information criterion (AIC<i><sub>c</sub></i>) corrected for small sample sizes.

Abstract

Extracted data

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