<p>Strains <i>sfl1</i>-CaEXP-<i>SFL1-HA<sub>3</sub></i> (Sfl1p-HA<sub>3</sub>) and <i>sfl2</i>-CaEXP-<i>SFL2-HA<sub>3</sub></i> (Sfl2p-HA<sub>3</sub>) together with their respective untagged control strains (Vector) were grown under the same conditions as those for the ChIP-Seq experiment prior to ChIP followed by PCR to detect specific Sfl1p and Sfl2p binding enrichment at selected target promoters (See <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1003519#s4" target="_blank">Materials and Methods</a> for details). PCR was performed using primers corresponding to the promoter region of the indicated genes. The <i>URA3</i> and <i>YAK1</i> genes were used as a negative control for ChIP enrichment. Primer efficie...
<p>(<b>A</b>) Schematic representation of the <i>SFL1-HA<sub>3</sub></i> or <i>SFL2-HA<sub>3</sub></...
<p>(A) ChIP-PCR analysis of the <i>in vivo</i> binding of myc-bHLH3 to the promoter of <i>DFR</i>. C...
<p>(A) Promoter-fusion analysis of the upstream regions <i>flhB</i>, <i>aaeB</i>, <i>flgG</i> and <i...
<p>(<b>A</b>) ChIP-PCR assay of selected Sfl1p and Sfl2p target promoters. Strains SFL1-TAP (CEC1922...
<p>Chromatin immunoprecipitation (ChIP) assays were performed in a Sfl2-Myc-tagged strain grown on Y...
<p><i>p</i>-Values for a test of a difference of means for ChIP analysis of the <i>CLN2</i> promoter...
<p>(<b>A</b>) ChIP assays <i>in </i><i>vivo</i>. Anti-SAV576 antibodies were used to immunoprecipita...
<p><b>(A)</b> Targeted validation of σ<sup>54</sup> binding sites. ChIP-qPCR measurement of σ<sup>54...
(A) Yeast one-hybrid analysis shows that LIP1, while LC3 does not, binds to the OsIAA12 promoter reg...
<p>(A) Schematic representation of the VSV-G tag integration vector and its use to construct the LVS...
<p>A, Schematic illustration of 5′-proximal promoter region of <i>LEDGF/p75</i> containing Sp1 bindi...
<p>Rows represent different promoter architectures (F1–F29). The two columns labeled ‘Activators’ an...
<p>(A) Schematic showing the <i>CD3ζ</i> promoter-luciferase pGL2-Zeta-3 construct. Arrows indicate ...
<p>(<b>A</b>) Venn diagram of the overlap between Sfl1p and Sfl2p binding targets. All 113 Sfl1p tar...
<p>(A) Illustration of the <i>SlHsp26.1-P</i> and <i>SlHsp21.5-ER</i> promoter regions showing the p...
<p>(<b>A</b>) Schematic representation of the <i>SFL1-HA<sub>3</sub></i> or <i>SFL2-HA<sub>3</sub></...
<p>(A) ChIP-PCR analysis of the <i>in vivo</i> binding of myc-bHLH3 to the promoter of <i>DFR</i>. C...
<p>(A) Promoter-fusion analysis of the upstream regions <i>flhB</i>, <i>aaeB</i>, <i>flgG</i> and <i...
<p>(<b>A</b>) ChIP-PCR assay of selected Sfl1p and Sfl2p target promoters. Strains SFL1-TAP (CEC1922...
<p>Chromatin immunoprecipitation (ChIP) assays were performed in a Sfl2-Myc-tagged strain grown on Y...
<p><i>p</i>-Values for a test of a difference of means for ChIP analysis of the <i>CLN2</i> promoter...
<p>(<b>A</b>) ChIP assays <i>in </i><i>vivo</i>. Anti-SAV576 antibodies were used to immunoprecipita...
<p><b>(A)</b> Targeted validation of σ<sup>54</sup> binding sites. ChIP-qPCR measurement of σ<sup>54...
(A) Yeast one-hybrid analysis shows that LIP1, while LC3 does not, binds to the OsIAA12 promoter reg...
<p>(A) Schematic representation of the VSV-G tag integration vector and its use to construct the LVS...
<p>A, Schematic illustration of 5′-proximal promoter region of <i>LEDGF/p75</i> containing Sp1 bindi...
<p>Rows represent different promoter architectures (F1–F29). The two columns labeled ‘Activators’ an...
<p>(A) Schematic showing the <i>CD3ζ</i> promoter-luciferase pGL2-Zeta-3 construct. Arrows indicate ...
<p>(<b>A</b>) Venn diagram of the overlap between Sfl1p and Sfl2p binding targets. All 113 Sfl1p tar...
<p>(A) Illustration of the <i>SlHsp26.1-P</i> and <i>SlHsp21.5-ER</i> promoter regions showing the p...
<p>(<b>A</b>) Schematic representation of the <i>SFL1-HA<sub>3</sub></i> or <i>SFL2-HA<sub>3</sub></...
<p>(A) ChIP-PCR analysis of the <i>in vivo</i> binding of myc-bHLH3 to the promoter of <i>DFR</i>. C...
<p>(A) Promoter-fusion analysis of the upstream regions <i>flhB</i>, <i>aaeB</i>, <i>flgG</i> and <i...