<p>A: The percentage of mapped reads to intragenic regions are much higher in the NuGEN than the PolyA samples (left axis for the blue line), however the number of genes with detected intragenic expression is lower than or similar to the PolyA samples. B: intragenic expression coefficient of variance between the PolyA and the NuGEN samples. The NuGEN samples have much higher variance than the PolyA samples.</p
<p>The horizontal axes in the panels show bins of fluorescence signals from the genotyping data, sum...
Additional file 2. Principal component analysis (PCA) and probe signal distributions. (A) Samples pl...
<div><h3>Background</h3><p>Variance in microarray studies has been widely discussed as a critical to...
<p>Samples with “.pa” extension were from the PolyA preparation and the samples with “.ng” were from...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>A: Captured exons by either the PolyA or the NuGEN with the common and unique ones shown in the V...
<p>A comparison of within-condition gene expression-difference to the median expression level for th...
<p>A: The total number of SNVs by the NuGEN (solid lines) and the PolyA (dashed lines) preparation (...
<p>Shown on panels A), C) and E) are the results for the genic SNPs, and shown on panels B), D) and ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Relative gene expression is shown as log<sub>2</sub> deviations from <i>D. simulans</i> and using...
Expression of genes with statistically significant expression differences in tissue and genotypic te...
<p>Log2-fold change is indicated <i>vs.</i> the average counts over all six samples.</p><p>Different...
<p>Expression of each gene was determined by quantitative PCR in the indicated H37Rv-derived strains...
<p>Y axis on the left for solid lines and Y axis on the right for dashed lines, representing million...
<p>The horizontal axes in the panels show bins of fluorescence signals from the genotyping data, sum...
Additional file 2. Principal component analysis (PCA) and probe signal distributions. (A) Samples pl...
<div><h3>Background</h3><p>Variance in microarray studies has been widely discussed as a critical to...
<p>Samples with “.pa” extension were from the PolyA preparation and the samples with “.ng” were from...
<p>A: Differentially expressed genes at FDR 0.05 (highlighted in red) between non-involuted and invo...
<p>A: Captured exons by either the PolyA or the NuGEN with the common and unique ones shown in the V...
<p>A comparison of within-condition gene expression-difference to the median expression level for th...
<p>A: The total number of SNVs by the NuGEN (solid lines) and the PolyA (dashed lines) preparation (...
<p>Shown on panels A), C) and E) are the results for the genic SNPs, and shown on panels B), D) and ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Relative gene expression is shown as log<sub>2</sub> deviations from <i>D. simulans</i> and using...
Expression of genes with statistically significant expression differences in tissue and genotypic te...
<p>Log2-fold change is indicated <i>vs.</i> the average counts over all six samples.</p><p>Different...
<p>Expression of each gene was determined by quantitative PCR in the indicated H37Rv-derived strains...
<p>Y axis on the left for solid lines and Y axis on the right for dashed lines, representing million...
<p>The horizontal axes in the panels show bins of fluorescence signals from the genotyping data, sum...
Additional file 2. Principal component analysis (PCA) and probe signal distributions. (A) Samples pl...
<div><h3>Background</h3><p>Variance in microarray studies has been widely discussed as a critical to...