<p>Second column shows the number of scanned sequences (and the amount as a fraction of the whole combined sequence space). The third column shows the fraction of coexisting sequences in the scanned domain, i.e. the probability of coexistence of random sequence groups of size with a given parameter set. (S) indicates that all cases of coexistence are locally asymptotically stable. The fourth column shows the average of the leading eigenvalues (if there is coexistence) as a measure of stability. For parameters, see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003193#pcbi.1003193.s009" target="_blank">Text S1</a>.</p
each sequence is represented by one of the four different symbols, circles, star, sqaure and triangl...
A novel method for the identification of correlated pairs in aligned homologous protein sequences is...
Background: While the conserved positions of a multiple sequence alignment (MSA) are clearly of inte...
<p>Second column shows the number of scanned sequences (the whole combined sequence space for all in...
<p>Second column shows the number of scanned sequences (and the amount as a fraction of the combined...
<p>Second column shows the number of scanned sequences (and the amount as a fraction of the whole se...
<p>Each cell is an average of numerical results over 1000 random parameter setups. Purple indicates ...
<p>Lower left half: coexistence is marked by green, extinction of the first sequence pair by red and...
<p>The green indicates stable coexistence, grey indicates structurally unstable coexistence, i.e. co...
Comparative study of the effectiveness and limitations of current methods for detecting sequence coe...
Motivation: Diverse studies have shown that correlated mutation (CM) is an important molecular evolu...
<div><p>Using ClustalW, pair-wise sequence identity comparisons were made between 30 randomly select...
Ignment (MSAs, with the sizes ranging between 20 and 100 sequences), mean pairwise amino acid distan...
While the conserved positions of a multiple sequence alignment (MSA) are clearly of interest, non-co...
Background: We study the problem of mapping proteins between two protein families in the presence of...
each sequence is represented by one of the four different symbols, circles, star, sqaure and triangl...
A novel method for the identification of correlated pairs in aligned homologous protein sequences is...
Background: While the conserved positions of a multiple sequence alignment (MSA) are clearly of inte...
<p>Second column shows the number of scanned sequences (the whole combined sequence space for all in...
<p>Second column shows the number of scanned sequences (and the amount as a fraction of the combined...
<p>Second column shows the number of scanned sequences (and the amount as a fraction of the whole se...
<p>Each cell is an average of numerical results over 1000 random parameter setups. Purple indicates ...
<p>Lower left half: coexistence is marked by green, extinction of the first sequence pair by red and...
<p>The green indicates stable coexistence, grey indicates structurally unstable coexistence, i.e. co...
Comparative study of the effectiveness and limitations of current methods for detecting sequence coe...
Motivation: Diverse studies have shown that correlated mutation (CM) is an important molecular evolu...
<div><p>Using ClustalW, pair-wise sequence identity comparisons were made between 30 randomly select...
Ignment (MSAs, with the sizes ranging between 20 and 100 sequences), mean pairwise amino acid distan...
While the conserved positions of a multiple sequence alignment (MSA) are clearly of interest, non-co...
Background: We study the problem of mapping proteins between two protein families in the presence of...
each sequence is represented by one of the four different symbols, circles, star, sqaure and triangl...
A novel method for the identification of correlated pairs in aligned homologous protein sequences is...
Background: While the conserved positions of a multiple sequence alignment (MSA) are clearly of inte...