The percentage identities between two duck CoVs and 13 IBVs based on their amino acid sequences in the 1b1, 1b2 and 1b3 regions in the viral 1b gene.

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; KF006985) and bovine kobuvirus (BKoV; AB084788), human aichivirus (AIV; FJ890523), porcine kobuvirus (PKoV; GU292559), and klassevirus (Klasse; GQ184145).

Saskia L. Smits (253524)
V. Stalin Raj (433879)
Minoushka D. Oduber (448113)
Claudia M. E. Schapendonk (433877)
Rogier Bodewes (372744)
Lisette Provacia (448114)
Koert J. Stittelaar (144344)
Albert D. M. E. Osterhaus (138961)
Bart L. Haagmans (253561)

August 2013

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; ...

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with those of selected viruses in the families Benyviridae and Virgaviridae.

Sun-Jung Kwon (5879699)
Gug-Seoun Choi (5879702)
Boram Choi (5879705)
Jang-Kyun Seo (142217)

October 2018

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with ...

Percent nucleotide sequence identities between the complete genomes of prototype strains of the nine APMV serotypes.

Arthur S. Samuel (367042)
Anandan Paldurai (292415)
Sachin Kumar (356188)
Peter L. Collins (185612)
Siba K. Samal (288692)

February 2013

Percent nucleotide sequence identities between the complete genomes of prototype strains of the n...

Phylogenetic relationships of two duck CoVs and 13 IBVs based on the 1b1 (A), 1b2 (B) and 1b3 (C) regions in the viral 1b gene.

Gui-Qian Chen (452384)
Qing-Ye Zhuang (452385)
Kai-Cheng Wang (452386)
Shuo Liu (108276)
Jian-Zhong Shao (317436)
Wen-Ming Jiang (452387)
Guang-Yu Hou (452388)
Jin-Ping Li (2265109)
Jian-Min Yu (452389)
Yi-Ping Li (2902158)
Ji-Ming Chen (452390)

August 2013

The GenBank accession numbers were given before the corresponding strain designations where CK, D...

Distribution of mapped reads along the duck genome.

Tie-Shan Xu (4002080)
Li-Hong Gu (4002071)
Wei Huang (36889)
Wan-Liang Xia (4002065)
Yun-Sheng Zhang (4002074)
Ya-Ge Zhang (4002077)
Guang Rong (4002068)
Kyle Schachtschneider (3406841)
Shui-Sheng Hou (4002083)

May 2017

E13-1, E13-2, and E13-3 denote the first, second, and third sample collected at E13, respectively...

Tajima’s D statistics calculated in MEGA for mitochondrial gene regions of three Andean duck species.

Allie M. Graham (4110175)
Philip Lavretsky (3246990)
Robert E. Wilson (17729600)
Kevin G. McCracken (16984357)

January 2024

Tajima’s D statistics calculated in MEGA for mitochondrial gene regions of three Andean duck species...

Genetic structure of the gene lineages and sub-lineages of the Atlantic flyway duck AIVs.

Yanyan Huang (199515)
Michelle Wille (122037)
Ashley Dobbin (517445)
Natasha M. Walzthöni (517446)
Gregory J. Robertson (217452)
Davor Ojkic (328691)
Hugh Whitney (217457)
Andrew S. Lang (217475)

January 2014

The numbers of genes in each detected sub-lineage for each of the segments of the 109 Atlantic fl...

Percent identities of the nucleotide coding sequences of selected HAdV-D59 coding regions to homologous sequences from other viruses in species HAdV-D.

Elizabeth B. Liu (206603)
Debra A. Wadford (329603)
Jason Seto (329604)
Maria Vu (329605)
Nolan Ryan Hudson (206624)
Lisa Thrasher (329607)
Sarah Torres (329608)
David W. Dyer (206629)
James Chodosh (48543)
Donald Seto (3729)
Morris S. Jones (206632)

February 2013

Percent identities of the nucleotide coding sequences of selected HAdV-D59 coding regions to homo...

Summary of gene lineage and gene type diversity by segment for the 109 Atlantic flyway duck AIVs from 2006–2011.

Yanyan Huang (199515)
Michelle Wille (122037)
Ashley Dobbin (517445)
Natasha M. Walzthöni (517446)
Gregory J. Robertson (217452)
Davor Ojkic (328691)
Hugh Whitney (217457)
Andrew S. Lang (217475)

January 2014

aGene lineages, sub-lineages and types are defined as sharing ≥90%, ≥95% and ≥99% nucleotide iden...

Comparison of goose immune relevant genes with duck, chicken, turkey and zebra finch.

Mansoor Tariq (713803)
Rong Chen (29176)
Hongyu Yuan (713804)
Yanjie Liu (607219)
Yanan Wu (290695)
Junya Wang (713805)
Chun Xia (261727)

March 2015

The number of immune relevant genes of goose and its comparison among the known sequences of duck...

Percentages of amino acid sequence identity of LCV-SP RNA1 (MG489894) with LCV RNA1 (FJ380118) and BnYDV-RNA1 (EU191904).

Leticia Ruiz (128769)
Almudena Simón (5745884)
Carmen García (5745887)
Leonardo Velasco (4709839)
Dirk Janssen (276153)

September 2018

Percentages of amino acid sequence identity of LCV-SP RNA1 (MG489894) with LCV RNA1 (FJ380118) and B...

Comparison of top viral families identified in the species of wild ducks.

Luis Alfonso Ramírez-Martínez (6000326)
Elizabeth Loza-Rubio (3255633)
Juan Mosqueda (397949)
Manuel Leonardo González-Garay (6000329)
Gary García-Espinosa (6000332)

November 2018

The reads from the BLASTn search were normalized and analyzed with MEGAN. *The term “Others” represe...

Discovering All Transcriptome Single-Nucleotide Polymorphisms and Scanning for Selection Signatures in Ducks ()

Ruiyi Lin
Xiaoyong Du
Sixue Peng
Liubin Yang
Yunlong Ma
Yanzhang Gong
Shijun Li

January 2015

The duck is one of the most economically important waterfowl as a source of meat, eggs, and feathers...

Percentage of genes with only H3K4me3, or only H3K27me3 or both H3K4me3 and H3K27me3 enrichment in the chicken genome for each group.

Juan Luo (149338)
Apratim Mitra (130263)
Fei Tian (41830)
Shuang Chang (149341)
Huanmin Zhang (41829)
Kairong Cui (149344)
Ying Yu (7066)
Keji Zhao (149346)
Jiuzhou Song (41834)

July 2012

When there is an overlap of the H3K4me3 island with the TSS of a gene, it was defined as the H3K4...

Percent identity values between cysteine peptidase genes of T. gallinae and their homologues in T. vaginalis.

Aziza Amin (162615)
Katharina Nöbauer (162618)
Martina Patzl (162622)
Evelyn Berger (162625)
Michael Hess (127238)
Ivana Bilic (162631)

May 2012

Percent identity values between cysteine peptidase genes of T. gallinae and their homologu...

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; KF006985) and bovine kobuvirus (BKoV; AB084788), human aichivirus (AIV; FJ890523), porcine kobuvirus (PKoV; GU292559), and klassevirus (Klasse; GQ184145).

Saskia L. Smits (253524)
V. Stalin Raj (433879)
Minoushka D. Oduber (448113)
Claudia M. E. Schapendonk (433877)
Rogier Bodewes (372744)
Lisette Provacia (448114)
Koert J. Stittelaar (144344)
Albert D. M. E. Osterhaus (138961)
Bart L. Haagmans (253561)

August 2013

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; ...

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with those of selected viruses in the families Benyviridae and Virgaviridae.

Sun-Jung Kwon (5879699)
Gug-Seoun Choi (5879702)
Boram Choi (5879705)
Jang-Kyun Seo (142217)

October 2018

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with ...

Percent nucleotide sequence identities between the complete genomes of prototype strains of the nine APMV serotypes.

Arthur S. Samuel (367042)
Anandan Paldurai (292415)
Sachin Kumar (356188)
Peter L. Collins (185612)
Siba K. Samal (288692)

February 2013

Percent nucleotide sequence identities between the complete genomes of prototype strains of the n...

Phylogenetic relationships of two duck CoVs and 13 IBVs based on the 1b1 (A), 1b2 (B) and 1b3 (C) regions in the viral 1b gene.

Gui-Qian Chen (452384)
Qing-Ye Zhuang (452385)
Kai-Cheng Wang (452386)
Shuo Liu (108276)
Jian-Zhong Shao (317436)
Wen-Ming Jiang (452387)
Guang-Yu Hou (452388)
Jin-Ping Li (2265109)
Jian-Min Yu (452389)
Yi-Ping Li (2902158)
Ji-Ming Chen (452390)

August 2013

The GenBank accession numbers were given before the corresponding strain designations where CK, D...

Distribution of mapped reads along the duck genome.

Tie-Shan Xu (4002080)
Li-Hong Gu (4002071)
Wei Huang (36889)
Wan-Liang Xia (4002065)
Yun-Sheng Zhang (4002074)
Ya-Ge Zhang (4002077)
Guang Rong (4002068)
Kyle Schachtschneider (3406841)
Shui-Sheng Hou (4002083)

May 2017

E13-1, E13-2, and E13-3 denote the first, second, and third sample collected at E13, respectively...

Tajima’s D statistics calculated in MEGA for mitochondrial gene regions of three Andean duck species.

Allie M. Graham (4110175)
Philip Lavretsky (3246990)
Robert E. Wilson (17729600)
Kevin G. McCracken (16984357)

January 2024

Tajima’s D statistics calculated in MEGA for mitochondrial gene regions of three Andean duck species...

Genetic structure of the gene lineages and sub-lineages of the Atlantic flyway duck AIVs.

Yanyan Huang (199515)
Michelle Wille (122037)
Ashley Dobbin (517445)
Natasha M. Walzthöni (517446)
Gregory J. Robertson (217452)
Davor Ojkic (328691)
Hugh Whitney (217457)
Andrew S. Lang (217475)

January 2014

The numbers of genes in each detected sub-lineage for each of the segments of the 109 Atlantic fl...

Percent identities of the nucleotide coding sequences of selected HAdV-D59 coding regions to homologous sequences from other viruses in species HAdV-D.

Elizabeth B. Liu (206603)
Debra A. Wadford (329603)
Jason Seto (329604)
Maria Vu (329605)
Nolan Ryan Hudson (206624)
Lisa Thrasher (329607)
Sarah Torres (329608)
David W. Dyer (206629)
James Chodosh (48543)
Donald Seto (3729)
Morris S. Jones (206632)

February 2013

Percent identities of the nucleotide coding sequences of selected HAdV-D59 coding regions to homo...

Summary of gene lineage and gene type diversity by segment for the 109 Atlantic flyway duck AIVs from 2006–2011.

Yanyan Huang (199515)
Michelle Wille (122037)
Ashley Dobbin (517445)
Natasha M. Walzthöni (517446)
Gregory J. Robertson (217452)
Davor Ojkic (328691)
Hugh Whitney (217457)
Andrew S. Lang (217475)

January 2014

aGene lineages, sub-lineages and types are defined as sharing ≥90%, ≥95% and ≥99% nucleotide iden...

Comparison of goose immune relevant genes with duck, chicken, turkey and zebra finch.

Mansoor Tariq (713803)
Rong Chen (29176)
Hongyu Yuan (713804)
Yanjie Liu (607219)
Yanan Wu (290695)
Junya Wang (713805)
Chun Xia (261727)

March 2015

The number of immune relevant genes of goose and its comparison among the known sequences of duck...

Percentages of amino acid sequence identity of LCV-SP RNA1 (MG489894) with LCV RNA1 (FJ380118) and BnYDV-RNA1 (EU191904).

Leticia Ruiz (128769)
Almudena Simón (5745884)
Carmen García (5745887)
Leonardo Velasco (4709839)
Dirk Janssen (276153)

September 2018

Percentages of amino acid sequence identity of LCV-SP RNA1 (MG489894) with LCV RNA1 (FJ380118) and B...

Comparison of top viral families identified in the species of wild ducks.

Luis Alfonso Ramírez-Martínez (6000326)
Elizabeth Loza-Rubio (3255633)
Juan Mosqueda (397949)
Manuel Leonardo González-Garay (6000329)
Gary García-Espinosa (6000332)

November 2018

The reads from the BLASTn search were normalized and analyzed with MEGAN. *The term “Others” represe...

Discovering All Transcriptome Single-Nucleotide Polymorphisms and Scanning for Selection Signatures in Ducks ()

Ruiyi Lin
Xiaoyong Du
Sixue Peng
Liubin Yang
Yunlong Ma
Yanzhang Gong
Shijun Li

January 2015

The duck is one of the most economically important waterfowl as a source of meat, eggs, and feathers...

Percentage of genes with only H3K4me3, or only H3K27me3 or both H3K4me3 and H3K27me3 enrichment in the chicken genome for each group.

Juan Luo (149338)
Apratim Mitra (130263)
Fei Tian (41830)
Shuang Chang (149341)
Huanmin Zhang (41829)
Kairong Cui (149344)
Ying Yu (7066)
Keji Zhao (149346)
Jiuzhou Song (41834)

July 2012

When there is an overlap of the H3K4me3 island with the TSS of a gene, it was defined as the H3K4...

Percent identity values between cysteine peptidase genes of T. gallinae and their homologues in T. vaginalis.

Aziza Amin (162615)
Katharina Nöbauer (162618)
Martina Patzl (162622)
Evelyn Berger (162625)
Michael Hess (127238)
Ivana Bilic (162631)

May 2012

Percent identity values between cysteine peptidase genes of T. gallinae and their homologu...

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; KF006985) and bovine kobuvirus (BKoV; AB084788), human aichivirus (AIV; FJ890523), porcine kobuvirus (PKoV; GU292559), and klassevirus (Klasse; GQ184145).

Saskia L. Smits (253524)
V. Stalin Raj (433879)
Minoushka D. Oduber (448113)
Claudia M. E. Schapendonk (433877)
Rogier Bodewes (372744)
Lisette Provacia (448114)
Koert J. Stittelaar (144344)
Albert D. M. E. Osterhaus (138961)
Bart L. Haagmans (253561)

August 2013

Pairwise amino acid identity in the P1, P2, and P3 regions between ferret kobuvirus 38 (MpKoV38; ...

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with those of selected viruses in the families Benyviridae and Virgaviridae.

Sun-Jung Kwon (5879699)
Gug-Seoun Choi (5879702)
Boram Choi (5879705)
Jang-Kyun Seo (142217)

October 2018

Amino acid sequence identities (%) of the genes encoded by goji berry chlorosis virus compared with ...

Percent nucleotide sequence identities between the complete genomes of prototype strains of the nine APMV serotypes.

Arthur S. Samuel (367042)
Anandan Paldurai (292415)
Sachin Kumar (356188)
Peter L. Collins (185612)
Siba K. Samal (288692)

February 2013

Percent nucleotide sequence identities between the complete genomes of prototype strains of the n...

The percentage identities between two duck CoVs and 13 IBVs based on their amino acid sequences in the 1b1, 1b2 and 1b3 regions in the viral 1b gene.

Abstract

Extracted data

The percentage identities between two duck CoVs and 13 IBVs based on their amino acid sequences in the 1b1, 1b2 and 1b3 regions in the viral 1b gene.

Abstract

Extracted data

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