Venn diagrams of the number of SNPs identified in each dataset and with the respective bioinformatics pipeline.

<p>(<b>a</b>) SNPs identified with the SAMtools pipeline across all three platforms. (<b>b</b>) SNPs identified with the TASSEL pipeline across all three platforms. (<b>c</b>) SNPs identified in the HiSeq2000 data with both pipelines. (<b>d</b>) SNPs identified in the PGM data with both pipelines. (<b>e</b>) SNPs identified in the Proton data with both pipelines.