<p>Genes were identified in the motif position analysis with z-score> = 3. Thirteen modules were identified. Among them, 9 modules (circled in blue) were also identified <i>via</i> the motif enrichment analysis (See <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1003840#pgen-1003840-g002" target="_blank">Figure 2</a>), while 4 modules (circled in green) represent additional modules identified <i>via</i> the motif position analysis. Red nodes – genes whose promoters contain the G-box motif; white nodes – genes whose promoters lack the G-box motif.</p
<p>Grey boxes represent gene regulatory modules; rectangles, genes in the modules; red rectangles, g...
Abstract Background The identification of motif modules, groups of multiple motifs frequently occurr...
<div><p>A total of 23 genes from the core of the Cdc15 cluster (cdc15), the 18 genes from the Cdc18 ...
<p>Genes were identified by motif enrichment analysis with pValue for the G-box motif < = 0.001. Ele...
<p>Genes were identified in the motif position analysis with z-score> = 3. Five modules were identif...
<p>Genes were identified in the motif position analysis with z-score> = 2.2. Sixteen modules were id...
<p>Genes were identified in the motif enrichment analysis with pValue for the W-box motifs < = 0.001...
<p>(A) A representation of the co-expression network. Each node represents a gene, while a connectio...
Understanding of gene regulatory networks requires discovery of expression modules within gene co-ex...
<p>Genes were identified in the motif enrichment analysis with a pValue for MYB motifs < = 0.01. Ten...
<p>(A) Genes identified to be regulated by the G-box, MYB, W-box, and site II element motifs are spr...
Understanding of gene regulatory networks requires discovery of expression modules within gene co-ex...
*<p>GO enrichment was calculated according to the modules in <a href="http://www.plosgenetics.org/ar...
<p>Five regulatory motifs were investigated in three networks, phosphorylation network, transcriptio...
*<p>GO enrichment was calculated according to the modules in <a href="http://www.plosgenetics.org/ar...
<p>Grey boxes represent gene regulatory modules; rectangles, genes in the modules; red rectangles, g...
Abstract Background The identification of motif modules, groups of multiple motifs frequently occurr...
<div><p>A total of 23 genes from the core of the Cdc15 cluster (cdc15), the 18 genes from the Cdc18 ...
<p>Genes were identified by motif enrichment analysis with pValue for the G-box motif < = 0.001. Ele...
<p>Genes were identified in the motif position analysis with z-score> = 3. Five modules were identif...
<p>Genes were identified in the motif position analysis with z-score> = 2.2. Sixteen modules were id...
<p>Genes were identified in the motif enrichment analysis with pValue for the W-box motifs < = 0.001...
<p>(A) A representation of the co-expression network. Each node represents a gene, while a connectio...
Understanding of gene regulatory networks requires discovery of expression modules within gene co-ex...
<p>Genes were identified in the motif enrichment analysis with a pValue for MYB motifs < = 0.01. Ten...
<p>(A) Genes identified to be regulated by the G-box, MYB, W-box, and site II element motifs are spr...
Understanding of gene regulatory networks requires discovery of expression modules within gene co-ex...
*<p>GO enrichment was calculated according to the modules in <a href="http://www.plosgenetics.org/ar...
<p>Five regulatory motifs were investigated in three networks, phosphorylation network, transcriptio...
*<p>GO enrichment was calculated according to the modules in <a href="http://www.plosgenetics.org/ar...
<p>Grey boxes represent gene regulatory modules; rectangles, genes in the modules; red rectangles, g...
Abstract Background The identification of motif modules, groups of multiple motifs frequently occurr...
<div><p>A total of 23 genes from the core of the Cdc15 cluster (cdc15), the 18 genes from the Cdc18 ...