<p>Unique: the read is mapped back only to its original genome; Not unique: the read is mapped back to more than one reference genomes; Not hit: the read can’t be mapped back to any reference genome. LC-100 is the simulated data from the low complexity metagenome (Dataset A) with read length 100 bps and other datasets are named similarly for simulated data derived from Dataset B and C.</p>*<p>most reads of not hit are because of the repeats in the reads so that they can’t be mapped back uniquely by Blast.</p
<p>A) Unique mapped reads are considered to be the fraction of mapped reads after duplicate reads ar...
Mapping short reads against a reference genome is classically the first step of many next-generation...
<p>(<b>a</b>) Size class distribution for total reads (redundant reads); (<b>b</b>) size class distr...
<p>For each library, the average read length, percent G+C, total number of reads, and the numbers of...
<p>Note: – represents no hits. Sesame repeat sequences were used as the query. The number in the tab...
<p>Samples had between 0.2 and 2.8 million reads with 90% of samples having over 1 million reads. Ra...
<p>Within an edit distance of 1 mismatch, the sequence IMG maps uniquely to location ING in the sche...
<p>For each organism the number of BLAST hits as well as the unique number of bases in genomes is gi...
<p>Reads simulated with average expected differences between 0 and 24% from target exons on the refe...
<p>The proportions of unique positions within different regions were calculated for read lengths in ...
<p>Comparison of the average number of unique reads generated from samples with varying amounts of D...
<p>(<b>A</b>) Histogram showing how uniqueness compensation using MULTo affects the RPKM values at d...
<p>(A) Depth of coverage of unique mapped reads. Samples randomly selected from the same number of r...
<p>The number of the sequence reads mapped to the reference genome (<i>Cryptococcus neoformans</i> v...
<p>The observed abundances by mapping reads to reference genomes and the expected abundance correlat...
<p>A) Unique mapped reads are considered to be the fraction of mapped reads after duplicate reads ar...
Mapping short reads against a reference genome is classically the first step of many next-generation...
<p>(<b>a</b>) Size class distribution for total reads (redundant reads); (<b>b</b>) size class distr...
<p>For each library, the average read length, percent G+C, total number of reads, and the numbers of...
<p>Note: – represents no hits. Sesame repeat sequences were used as the query. The number in the tab...
<p>Samples had between 0.2 and 2.8 million reads with 90% of samples having over 1 million reads. Ra...
<p>Within an edit distance of 1 mismatch, the sequence IMG maps uniquely to location ING in the sche...
<p>For each organism the number of BLAST hits as well as the unique number of bases in genomes is gi...
<p>Reads simulated with average expected differences between 0 and 24% from target exons on the refe...
<p>The proportions of unique positions within different regions were calculated for read lengths in ...
<p>Comparison of the average number of unique reads generated from samples with varying amounts of D...
<p>(<b>A</b>) Histogram showing how uniqueness compensation using MULTo affects the RPKM values at d...
<p>(A) Depth of coverage of unique mapped reads. Samples randomly selected from the same number of r...
<p>The number of the sequence reads mapped to the reference genome (<i>Cryptococcus neoformans</i> v...
<p>The observed abundances by mapping reads to reference genomes and the expected abundance correlat...
<p>A) Unique mapped reads are considered to be the fraction of mapped reads after duplicate reads ar...
Mapping short reads against a reference genome is classically the first step of many next-generation...
<p>(<b>a</b>) Size class distribution for total reads (redundant reads); (<b>b</b>) size class distr...