<p>FapA homologs were identified using the respective HMMs within 10 large metagenomes from a diverse range of habitats, see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0076630#pone-0076630-t002" target="_blank">Table 2</a>. The hits were aligned with the FapA homologs identified within the refseq protein database and phylogenetic trees were estimated using the neighbor-joining method. The phylogenetic tree is colored according to taxonomy. Betaproteobacteria (blue), Gammaproteobacteria (brown), and Deltaproteobacteria (red). Metagenome hits are highlighted in red text. Nonparametric bootstrap values are shown for each node. The absence of a bootstrap value represent 100% bootstrap support.</p
<p>The neighbor-joining tree inferred from the amino acid composition of the selected genomes, inclu...
<p>The tree was divided into what we propose are distinct subfamilies of sequences, based on bootstr...
<p>Unrooted neighbour joining tree was based on partial <i>rpoB</i> sequences (1030 bp). Bootstrap v...
<p>Comparison of phylogenetic trees based on the FapA, FapD and FapF protein sequences and correspon...
<p>An unrooted phylogenetic tree was inferred by neighbor-joining (NJ) analysis. The scale bar indic...
<p>Taxonomic analysis was performed based on the NCBI taxonomy and visualized using MEGAN [37]. The ...
<p>The tree was constructed using neighbour joining method, bootstrap 1000, with the alignment based...
<p>Sequence information was summarized in <a href="http://www.plosone.org/article/info:doi/10.1371/j...
(A) Phylogenetic heat tree of proteins in FUnkFams generated with Metacoder [10]. Each FUnkFams prot...
<p>Relationships are shown as an unrooted maximum likelihood phylogram. The numbers at the nodes ind...
ABSTRACT: We develop a procedure called RiPE (Retrieval-induced Phylogeny Environment) that automati...
Functional bacterial amyloids (FuBA) are important components in many environmental biofilms where t...
Functional bacterial amyloids (FuBA) are important components in many environmental biofilms where t...
<p>Bacterial names, accession numbers, and taxonomic groups are indicated for each branch. Bold char...
<div><p>Functional bacterial amyloids (FuBA) are important components in many environmental biofilms...
<p>The neighbor-joining tree inferred from the amino acid composition of the selected genomes, inclu...
<p>The tree was divided into what we propose are distinct subfamilies of sequences, based on bootstr...
<p>Unrooted neighbour joining tree was based on partial <i>rpoB</i> sequences (1030 bp). Bootstrap v...
<p>Comparison of phylogenetic trees based on the FapA, FapD and FapF protein sequences and correspon...
<p>An unrooted phylogenetic tree was inferred by neighbor-joining (NJ) analysis. The scale bar indic...
<p>Taxonomic analysis was performed based on the NCBI taxonomy and visualized using MEGAN [37]. The ...
<p>The tree was constructed using neighbour joining method, bootstrap 1000, with the alignment based...
<p>Sequence information was summarized in <a href="http://www.plosone.org/article/info:doi/10.1371/j...
(A) Phylogenetic heat tree of proteins in FUnkFams generated with Metacoder [10]. Each FUnkFams prot...
<p>Relationships are shown as an unrooted maximum likelihood phylogram. The numbers at the nodes ind...
ABSTRACT: We develop a procedure called RiPE (Retrieval-induced Phylogeny Environment) that automati...
Functional bacterial amyloids (FuBA) are important components in many environmental biofilms where t...
Functional bacterial amyloids (FuBA) are important components in many environmental biofilms where t...
<p>Bacterial names, accession numbers, and taxonomic groups are indicated for each branch. Bold char...
<div><p>Functional bacterial amyloids (FuBA) are important components in many environmental biofilms...
<p>The neighbor-joining tree inferred from the amino acid composition of the selected genomes, inclu...
<p>The tree was divided into what we propose are distinct subfamilies of sequences, based on bootstr...
<p>Unrooted neighbour joining tree was based on partial <i>rpoB</i> sequences (1030 bp). Bootstrap v...