<p>The comparisons were performed in all cases between a non-propeller fold and the closest β-propeller superfamily, as deduced from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0077074#pone-0077074-g002" target="_blank">Figure 2</a>. The panels show in orange: A) IRE1-LD vs. PQQ, B) β-prism type II vs. PQQ, C) β-pinwheels vs. WD40, and D) WW domains vs. PQQ. In each case, the comparison of the non-propeller fold to a background set of proteins consisting of the SCOP all-β class minus the superfamilies of this study is shown in blue as a reference (see also <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0077074#s2" target="_blank">Methods</a>). The plots represent the structure and sequence si...
Many protein classification systems capture homologous relationships by grouping domains into famili...
Many protein classification systems capture homologous relationships by grouping domains into famili...
We address the problem of homology identification in complex multidomain families with varied domain...
Motivation: The underlying assumption of many sequence-based comparative studies in proteomics is th...
Structural similarities between proteins with no amino acid sequence homology either indicate a phyl...
Several studies based on the known three-dimensional (3-D) structures of proteins show that two homo...
Several studies based on the known three-dimensional (3-D) structures of proteins show that two homo...
Understanding how protein structures evolve is essential for deciphering relationships between homol...
The database PALI (Phylogeny and ALIgnment of homologous protein structures) consists of families of...
Background Protein sequence similarities to any types of non-globular segments (coiled coils, low c...
Background: Classification of newly resolved protein structures is important in understanding their ...
AbstractRecent structure determinations have made new additions to a set of strikingly different seq...
One of the landmark successes in bioinformatics has been the development of sequence-based algorithm...
<p>A single established or predicted topology is included for each family, although it is possible t...
Two quantities, herein defined as the displacement and the uniqueness, describe quantitatively the t...
Many protein classification systems capture homologous relationships by grouping domains into famili...
Many protein classification systems capture homologous relationships by grouping domains into famili...
We address the problem of homology identification in complex multidomain families with varied domain...
Motivation: The underlying assumption of many sequence-based comparative studies in proteomics is th...
Structural similarities between proteins with no amino acid sequence homology either indicate a phyl...
Several studies based on the known three-dimensional (3-D) structures of proteins show that two homo...
Several studies based on the known three-dimensional (3-D) structures of proteins show that two homo...
Understanding how protein structures evolve is essential for deciphering relationships between homol...
The database PALI (Phylogeny and ALIgnment of homologous protein structures) consists of families of...
Background Protein sequence similarities to any types of non-globular segments (coiled coils, low c...
Background: Classification of newly resolved protein structures is important in understanding their ...
AbstractRecent structure determinations have made new additions to a set of strikingly different seq...
One of the landmark successes in bioinformatics has been the development of sequence-based algorithm...
<p>A single established or predicted topology is included for each family, although it is possible t...
Two quantities, herein defined as the displacement and the uniqueness, describe quantitatively the t...
Many protein classification systems capture homologous relationships by grouping domains into famili...
Many protein classification systems capture homologous relationships by grouping domains into famili...
We address the problem of homology identification in complex multidomain families with varied domain...