COG classifications of genes containing CBM2 motifs in microbial communities from thermophilic and mesophilic enrichments.

LL-37 and ClnR impact global gene expression.

Emily C. Woods (5646341)
Adrianne N. Edwards (5646344)
Kevin O. Childress (5646347)
Joshua B. Jones (5646350)
Shonna M. McBride (57435)

August 2018

The genes listed in S1 Table (black) and S4 Table (light and dark purple) were assigned COG classifi...

COG functional categories of the 125 genes involved in ON2010-specific recombination.

Weilong Hao (173203)
Vanessa G. Allen (138884)
Frances B. Jamieson (138914)
Donald E. Low (130661)
David C. Alexander (173209)

April 2012

The functional categories are information storage and processing, including COG categories J, K, ...

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best BLASTp hit to reference genomes.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best...

Consensus neighbor-joining tree of CBH-A genes with CBM2 in the thermophilic microbial community.

Amitha P. Reddy (476899)
Christopher W. Simmons (476900)
Patrik D’haeseleer (476901)
Jane Khudyakov (476902)
Helcio Burd (162438)
Masood Hadi (331952)
Blake A. Simmons (108789)
Steven W. Singer (162486)
Michael P. Thelen (200081)
Jean S. VanderGheynst (254496)

October 2013

Genes are represented by their IMG gene object ID numbers. For genes that had a glycoside hydrola...

Phylogenetic distribution and domain composition of COG1058.

Lucia Cialabrini (105904)
Silverio Ruggieri (105913)
Marat D. Kazanov (158374)
Leonardo Sorci (158389)
Francesca Mazzola (105909)
Giuseppe Orsomando (105901)
Andrei L. Osterman (135474)
Nadia Raffaelli (421044)

June 2013

Schematic representation of bacterial (A), eukaryotic (B) and archaeal (C) species trees showing ...

Distribution of the core and flexible genes from all the Microcystis genomes in the Clusters of Orthologous Groups (COGs).

Jean-François Humbert (187330)
Valérie Barbe (13454)
Amel Latifi (7988)
Muriel Gugger (444482)
Alexandra Calteau (35271)
Therese Coursin (444483)
Aurélie Lajus (10222)
Vanina Castelli (444484)
Sophie Oztas (88416)
Gaëlle Samson (444485)
Cyrille Longin (444486)
Claudine Medigue (3525755)
Nicole Tandeau de Marsac (232702)

August 2013

Only the COG categories containing >1% of the genes in at least one of the two core genomes, are ...

Fig 3 -

Rajesh Kumar Vaid (11302529)
Zoozeal Thakur (11302532)
Taruna Anand (828898)
Sanjay Kumar (8853)
Bhupendra Nath Tripathi (9032255)

August 2021

a) Distribution of COG functional classes in core genome of investigated Salmonella strains by eggno...

Clusters of orthologous groups (COG) classification of differentially expressed genes in Camellia oleifera.

Bin Dong (147019)
Bin Wu (138543)
Wenhong Hong (4287919)
Xiuping Li (517509)
Zhuo Li (165589)
Li Xue (583505)
Yongfang Huang (4287916)

July 2017

Clusters of orthologous groups (COG) classification of differentially expressed genes in Camel...

Genomic organization of cosR flanking regions of Campylobacter species and other bacterial species in ε-Proteobacteria.

Sunyoung Hwang (213281)
William G. Miller (37611)
Sangryeol Ryu (12777)
Byeonghwa Jeon (29789)

February 2014

Genomic organization of cosR homolog (black arrows) flanking regions shows: (A) the absenc...

Classification of genes into Clusters of Orthologous Genes (COGs).

Nadav Kashtan (265054)
Sara E. Roggensack (789029)
Sébastien Rodrigue (139074)
Jessie W. Thompson (3261978)
Steven J. Biller (3261984)
Allison Coe (3261981)
Huiming Ding (196523)
Pekka Marttinen (119077)
Rex R Malmstrom (3262005)
Roman Stocker (224989)
Michael J. Follows (251914)
Ramunas Stepanauskas (170005)
Sallie W. Chisholm (53467)

October 2016

Classification of genes into Clusters of Orthologous Genes (COGs). Each entry is a gene (or partial...

Glycoside hydrolase genes relevant to lignocellulose deconstruction in high-abundance organisms within thermophilic and mesophilic community metagenomes.

Amitha P. Reddy (476899)
Christopher W. Simmons (476900)
Patrik D’haeseleer (476901)
Jane Khudyakov (476902)
Helcio Burd (162438)
Masood Hadi (331952)
Blake A. Simmons (108789)
Steven W. Singer (162486)
Michael P. Thelen (200081)
Jean S. VanderGheynst (254496)

October 2013

Glycoside hydrolase genes relevant to lignocellulose deconstruction in high-abundance organisms w...

Function classification in Clusters of Orthologous Groups of proteins (COG) of differentially expressed genes between NJCMS1A and NJCMS1B.

Jiajia Li (184267)
Shaohuai Han (740697)
Xianlong Ding (740698)
Tingting He (297525)
Jinying Dai (740699)
Shouping Yang (740700)
Junyi Gai (36666)

May 2015

Capital letters on X-axis indicated the COG categories as listed on the right of the histogram; Y...

COG functional categories of differentially expressed genes identified by both RNA-Seq and Microarrays.

Jieli Peng (545851)
Baohai Hao (545852)
Liu Liu (512237)
Shanming Wang (545853)
Binguang Ma (545854)
Yi Yang (116183)
Fuli Xie (193648)
Youguo Li (193660)

April 2014

All differentially expressed genes during bacteroids were assigned to the 26 COG functional categ...

Conservation of ME-matrix genes across enterobacters and non-enterobacters. Left

Ines Thiele (11375)
Ronan M. T. Fleming (130996)
Richard Que (131000)
Aarash Bordbar (131003)
Dinh Diep (131006)
Bernhard O. Palsson (91399)

September 2012

: K-means clustering was used to group KO terms within each category. The cluster with highest oc...

COG functional classification of the miRNA target genes identified in the L. chinensis libraries.

Junfeng Zhai (224241)
Yuanyuan Dong (182947)
Yepeng Sun (276617)
Qi Wang (22418)
Nan Wang (21935)
Fawei Wang (276618)
Weican Liu (276619)
Xiaowei Li (620087)
Huan Chen (6545)
Na Yao (182961)
Lili Guan (182965)
Kai Chen (129938)
Xiyan Cui (654531)
Meiying Yang (654532)
Haiyan Li (168109)

November 2014

COG functional classification of the miRNA target genes identified in the L. chinensis lib...

LL-37 and ClnR impact global gene expression.

Emily C. Woods (5646341)
Adrianne N. Edwards (5646344)
Kevin O. Childress (5646347)
Joshua B. Jones (5646350)
Shonna M. McBride (57435)

August 2018

The genes listed in S1 Table (black) and S4 Table (light and dark purple) were assigned COG classifi...

COG functional categories of the 125 genes involved in ON2010-specific recombination.

Weilong Hao (173203)
Vanessa G. Allen (138884)
Frances B. Jamieson (138914)
Donald E. Low (130661)
David C. Alexander (173209)

April 2012

The functional categories are information storage and processing, including COG categories J, K, ...

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best BLASTp hit to reference genomes.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best...

Consensus neighbor-joining tree of CBH-A genes with CBM2 in the thermophilic microbial community.

Amitha P. Reddy (476899)
Christopher W. Simmons (476900)
Patrik D’haeseleer (476901)
Jane Khudyakov (476902)
Helcio Burd (162438)
Masood Hadi (331952)
Blake A. Simmons (108789)
Steven W. Singer (162486)
Michael P. Thelen (200081)
Jean S. VanderGheynst (254496)

October 2013

Genes are represented by their IMG gene object ID numbers. For genes that had a glycoside hydrola...

Phylogenetic distribution and domain composition of COG1058.

Lucia Cialabrini (105904)
Silverio Ruggieri (105913)
Marat D. Kazanov (158374)
Leonardo Sorci (158389)
Francesca Mazzola (105909)
Giuseppe Orsomando (105901)
Andrei L. Osterman (135474)
Nadia Raffaelli (421044)

June 2013

Schematic representation of bacterial (A), eukaryotic (B) and archaeal (C) species trees showing ...

Distribution of the core and flexible genes from all the Microcystis genomes in the Clusters of Orthologous Groups (COGs).

Jean-François Humbert (187330)
Valérie Barbe (13454)
Amel Latifi (7988)
Muriel Gugger (444482)
Alexandra Calteau (35271)
Therese Coursin (444483)
Aurélie Lajus (10222)
Vanina Castelli (444484)
Sophie Oztas (88416)
Gaëlle Samson (444485)
Cyrille Longin (444486)
Claudine Medigue (3525755)
Nicole Tandeau de Marsac (232702)

August 2013

Only the COG categories containing >1% of the genes in at least one of the two core genomes, are ...

Fig 3 -

Rajesh Kumar Vaid (11302529)
Zoozeal Thakur (11302532)
Taruna Anand (828898)
Sanjay Kumar (8853)
Bhupendra Nath Tripathi (9032255)

August 2021

a) Distribution of COG functional classes in core genome of investigated Salmonella strains by eggno...

Clusters of orthologous groups (COG) classification of differentially expressed genes in Camellia oleifera.

Bin Dong (147019)
Bin Wu (138543)
Wenhong Hong (4287919)
Xiuping Li (517509)
Zhuo Li (165589)
Li Xue (583505)
Yongfang Huang (4287916)

July 2017

Clusters of orthologous groups (COG) classification of differentially expressed genes in Camel...

Genomic organization of cosR flanking regions of Campylobacter species and other bacterial species in ε-Proteobacteria.

Sunyoung Hwang (213281)
William G. Miller (37611)
Sangryeol Ryu (12777)
Byeonghwa Jeon (29789)

February 2014

Genomic organization of cosR homolog (black arrows) flanking regions shows: (A) the absenc...

Classification of genes into Clusters of Orthologous Genes (COGs).

Nadav Kashtan (265054)
Sara E. Roggensack (789029)
Sébastien Rodrigue (139074)
Jessie W. Thompson (3261978)
Steven J. Biller (3261984)
Allison Coe (3261981)
Huiming Ding (196523)
Pekka Marttinen (119077)
Rex R Malmstrom (3262005)
Roman Stocker (224989)
Michael J. Follows (251914)
Ramunas Stepanauskas (170005)
Sallie W. Chisholm (53467)

October 2016

Classification of genes into Clusters of Orthologous Genes (COGs). Each entry is a gene (or partial...

Glycoside hydrolase genes relevant to lignocellulose deconstruction in high-abundance organisms within thermophilic and mesophilic community metagenomes.

Amitha P. Reddy (476899)
Christopher W. Simmons (476900)
Patrik D’haeseleer (476901)
Jane Khudyakov (476902)
Helcio Burd (162438)
Masood Hadi (331952)
Blake A. Simmons (108789)
Steven W. Singer (162486)
Michael P. Thelen (200081)
Jean S. VanderGheynst (254496)

October 2013

Glycoside hydrolase genes relevant to lignocellulose deconstruction in high-abundance organisms w...

Function classification in Clusters of Orthologous Groups of proteins (COG) of differentially expressed genes between NJCMS1A and NJCMS1B.

Jiajia Li (184267)
Shaohuai Han (740697)
Xianlong Ding (740698)
Tingting He (297525)
Jinying Dai (740699)
Shouping Yang (740700)
Junyi Gai (36666)

May 2015

Capital letters on X-axis indicated the COG categories as listed on the right of the histogram; Y...

COG functional categories of differentially expressed genes identified by both RNA-Seq and Microarrays.

Jieli Peng (545851)
Baohai Hao (545852)
Liu Liu (512237)
Shanming Wang (545853)
Binguang Ma (545854)
Yi Yang (116183)
Fuli Xie (193648)
Youguo Li (193660)

April 2014

All differentially expressed genes during bacteroids were assigned to the 26 COG functional categ...

Conservation of ME-matrix genes across enterobacters and non-enterobacters. Left

Ines Thiele (11375)
Ronan M. T. Fleming (130996)
Richard Que (131000)
Aarash Bordbar (131003)
Dinh Diep (131006)
Bernhard O. Palsson (91399)

September 2012

: K-means clustering was used to group KO terms within each category. The cluster with highest oc...

COG functional classification of the miRNA target genes identified in the L. chinensis libraries.

Junfeng Zhai (224241)
Yuanyuan Dong (182947)
Yepeng Sun (276617)
Qi Wang (22418)
Nan Wang (21935)
Fawei Wang (276618)
Weican Liu (276619)
Xiaowei Li (620087)
Huan Chen (6545)
Na Yao (182961)
Lili Guan (182965)
Kai Chen (129938)
Xiyan Cui (654531)
Meiying Yang (654532)
Haiyan Li (168109)

November 2014

COG functional classification of the miRNA target genes identified in the L. chinensis lib...

LL-37 and ClnR impact global gene expression.

Emily C. Woods (5646341)
Adrianne N. Edwards (5646344)
Kevin O. Childress (5646347)
Joshua B. Jones (5646350)
Shonna M. McBride (57435)

August 2018

The genes listed in S1 Table (black) and S4 Table (light and dark purple) were assigned COG classifi...

COG functional categories of the 125 genes involved in ON2010-specific recombination.

Weilong Hao (173203)
Vanessa G. Allen (138884)
Frances B. Jamieson (138914)
Donald E. Low (130661)
David C. Alexander (173209)

April 2012

The functional categories are information storage and processing, including COG categories J, K, ...

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best BLASTp hit to reference genomes.

Victor M. Markowitz (13826)
I-Min A. Chen (283938)
Ken Chu (283940)
Ernest Szeto (13829)
Krishna Palaniappan (13828)
Biju Jacob (317049)
Anna Ratner (317051)
Konstantinos Liolios (49000)
Ioanna Pagani (317054)
Marcel Huntemann (34103)
Konstantinos Mavromatis (13836)
Natalia N. Ivanova (224150)
Nikos C. Kyrpides (13837)

February 2013

Distribution of genes of microbiomes grouped taxonomically and by habitat according to their best...

COG classifications of genes containing CBM2 motifs in microbial communities from thermophilic and mesophilic enrichments.

Abstract

Extracted data

COG classifications of genes containing CBM2 motifs in microbial communities from thermophilic and mesophilic enrichments.

Abstract

Extracted data

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