HPV16 genome deletions in a clinical specimen revealed by read mapping.
- Iwao Kukimoto (484481)
- Tomohiko Maehama (484482)
- Tsuyoshi Sekizuka (249989)
- Yumiko Ogasawara (484483)
- Kazunari Kondo (83029)
- Rika Kusumoto-Matsuo (484484)
- Seiichiro Mori (484485)
- Yoshiyuki Ishii (83028)
- Takamasa Takeuchi (484486)
- Toshiyuki Yamaji (484487)
- Fumihiko Takeuchi (118220)
- Kentaro Hanada (207598)
- Makoto Kuroda (249974)
Publication date
November 2013
DOIAbstract
<p>Mapping of paired-end read sequences to <i>de </i><i>novo</i> assembled full-length HPV16 genome sequence for LSIL sample 2 is visualized by Tablet. Deletions in the E2/E4 region (A) and in the region between E5 and L2 (B) are shown. (C) The genome organization of HPV16. The deleted regions in E2/E4 and between E5 and L2 are indicated with red and blue dotted-line boxes, respectively.</p
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