1<p>We show only repeat types with ≥2-fold enrichment among either the ChIP-seq peaks (showing only those with ≥100 peaks) or among the ChIP-seq reads (showing only those with ≥1000 reads). Repeat types are shown sorted by read-based enrichment estimate. Full results for all repeat types are shown in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1003947#pgen.1003947.s015" target="_blank">Table S2</a>, and are given aggregated by repeat family in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1003947#pgen.1003947.s016" target="_blank">Table S3</a>.</p
Repeat elements are important components of eukaryotic genomes. One limitation in our understanding ...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...
<p>Each repeat class is identified by the title of the respective subplot and subdivided into repeat...
<p>(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...
<p>(A) ∼1% of DUX4-bound regions show statistically-significant activation in response to DUX4 in ou...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Abstract Background Higher eukaryotic genomes are typically large, complex and filled with both gene...
We describe computational methods for analysis of repetitive elements from short-read sequencing dat...
Using computer programs developed for this purpose, we searched for various repeated sequences inclu...
Repeat elements in the RepeatScout library were classified into High, Mid and Low classes based on t...
<p>(<b>A</b>) Schema of repeat regions. Regions with only one type of motif are called pure repeat r...
Repeat elements are important components of eukaryotic genomes. The dropping cost of the second and ...
<p><b>A:</b> Accumulation plot showing the proportion of the 37 reproducible AID-dependent DSB sites...
<p><b>(A)</b> HMR ChIP tag enrichment at repetitive DNA elements. To identify enriched sequences the...
Repeat elements are important components of eukaryotic genomes. One limitation in our understanding ...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...
<p>Each repeat class is identified by the title of the respective subplot and subdivided into repeat...
<p>(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...
<p>(A) ∼1% of DUX4-bound regions show statistically-significant activation in response to DUX4 in ou...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Abstract Background Higher eukaryotic genomes are typically large, complex and filled with both gene...
We describe computational methods for analysis of repetitive elements from short-read sequencing dat...
Using computer programs developed for this purpose, we searched for various repeated sequences inclu...
Repeat elements in the RepeatScout library were classified into High, Mid and Low classes based on t...
<p>(<b>A</b>) Schema of repeat regions. Regions with only one type of motif are called pure repeat r...
Repeat elements are important components of eukaryotic genomes. The dropping cost of the second and ...
<p><b>A:</b> Accumulation plot showing the proportion of the 37 reproducible AID-dependent DSB sites...
<p><b>(A)</b> HMR ChIP tag enrichment at repetitive DNA elements. To identify enriched sequences the...
Repeat elements are important components of eukaryotic genomes. One limitation in our understanding ...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...
<p>Each repeat class is identified by the title of the respective subplot and subdivided into repeat...