Clone gains/losses by ALT activity.

Comprehensive analysis of copy number aberrations in microsatellite stable colon cancer in view of stromal component

Alonso Aguado, Maria Henar
Aussó, Susanna
Lopez-Dóriga, Adriana
Cordero Romera, David
Guinó, Elisabet
Solé Acha, Xavier
Barenys de Lacha, Mercé
Oca Burguete, Javier de
Capellá, G. (Gabriel)
Salazar Soler, Ramón
Sanz Pamplona, Rebeca
Moreno Aguado, Víctor

Background: Somatic copy number aberrations (CNA) are common acquired changes in cancer cells playin...

Number of clones in human tumors.

Franck Raynaud (5745788)
Marco Mina (158993)
Daniele Tavernari (5745791)
Giovanni Ciriello (158991)

September 2018

A) Number of clones in human tumors within each tumor type. Tumor types are ranked by median number ...

Lymph node status of PSCCs.

Susannah La-Touche (2269885)
Christophe Lemetre (505278)
Maryou Lambros (502435)
Elzbieta Stankiewicz (355292)
Charlotte K. Y. Ng (695361)
Britta Weigelt (40755)
Ramzi Rajab (2269882)
Brendan Tinwell (2269873)
Cathy Corbishley (2269879)
Nick Watkin (2269876)
Dan Berney (2269870)
Jorge S. Reis-Filho (265332)

February 2016

Fishers Exact plots of differential copy number gains and losses or amplifications/ high level ga...

Genomic Gains and Losses in Pancreatic Cancer.

Jian-Wei Liang (673513)
Zhi-Zhou Shi (673514)
Tian-Yun Shen (673515)
Xu Che (673516)
Zheng Wang (25883)
Su-Sheng Shi (673517)
Xin Xu (11989)
Yan Cai (298695)
Ping Zhao (47228)
Cheng-Feng Wang (673518)
Zhi-Xiang Zhou (673519)
Ming-Rong Wang (648367)

December 2014

Note: 1: when two or more adjacent cytobands have copy number changes at a frequency above 30% (g...

Comparison of chromosomal aberrations in CDC and UUT-UC tumors in percent.

Frank Becker (203176)
Kerstin Junker (475098)
Martin Parr (475099)
Arndt Hartmann (42756)
Susanne Füssel (475100)
Marieta Toma (475101)
Rainer Grobholz (475102)
Thomas Pflugmann (475103)
Bernd Wullich (44381)
Arne Strauss (475104)
Carl Ludwig Behnes (475105)
Wolfgang Otto (31658)
Michael Stöckle (44383)
Volker Jung (78021)

October 2013

Losses of chromosomal material are shown on the left side, gains on the right side.</p

Cumulative rates of gain and loss for tumors analyzed by CGH (red, 4 BRCA2-mutant tumors; black, 24 BRCAX tumors).

Audrey Rouault (292491)
Guillaume Banneau (292493)
Gaëtan MacGrogan (29233)
Natalie Jones (292495)
Nabila Elarouci (292496)
Emmanuelle Barouk-Simonet (292497)
Laurence Venat (292498)
Isabelle Coupier (292499)
Eric Letouzé (167040)
Aurélien de Reyniès (17289)
Françoise Bonnet (292500)
Richard Iggo (292501)
Nicolas Sévenet (292502)
Michel Longy (29236)

February 2013

A, All chromosomes; B, Chromosome 13; C, Chromosome 14. Each vertical line in B & C corresponds t...

Progression from colorectal adenoma to carcinoma is associated with non-random chromosomal gains as detected by comparative genomic hybridisation

Meijer, G A
Hermsen, M A
Baak, J P
van Diest, P J
Meuwissen, S G
Beliën, J A
Hoovers, J M
Joenje, H
Snijders, P J
Walboomers, J M

December 1998

AIMS: Chromosomal gains and losses were surveyed by comparative genomic hybridisation (CGH) in a ser...

Exome-wide simulated copy number profiles at a range of tumor purities yield expected allelic and copy number ratios.

Soroush Samadian (5028617)
Jeff P. Bruce (724950)
Trevor J. Pugh (3141498)

March 2018

Allelic ratio for allele-specific copy number gain (A) and loss (B) events at heterozygous SNP lo...

Cancer cells preferentially lose small chromosomes

Duijf, Pascal
Schultz, Nikolaus
Benezra, Robert

January 2012

Genetic and genomic aberrations are the primary cause of cancer. Chromosome missegregation leads to ...

Copy-number aberrations in mammary carcinomas from (SD×COP)F1 rats.

Mayumi Nishimura (455516)
Kazuhiro Daino (203837)
Maki Fukuda (11272926)
Ikuya Tanaka (11272929)
Hitomi Moriyama (11272932)
Kaye Showler (11272935)
Yukiko Nishimura (11272938)
Masaru Takabatake (3202710)
Toshiaki Kokubo (11272941)
Atsuko Ishikawa (11272944)
Kazumasa Inoue (3701080)
Masahiro Fukushi (3202707)
Shizuko Kakinuma (763026)
Tatsuhiko Imaoka (455512)
Yoshiya Shimada (203843)

August 2021

A, Chromosomal losses (green) and gains (red) in 21 tumors. Aberrations observed in the same carcino...

Comparative genomic hybridization.

Prashant Kumar (119326)
Malini Mukherjee (119327)
Jacob P. S. Johnson (119328)
Milan Patel (119329)
Bing Huey (119330)
Donna G. Albertson (119331)
Karl Simin (2706)

November 2012

TBP tumors (n = 8) and TP tumors (n = 10) were analyzed by array CGH to identify copy number aber...

Correlation of Chromosomal Instability, Telomere Length and Telomere Maintenance in Microsatellite Stable Rectal Cancer: A Molecular Subclass of Rectal Cancer

Boardman Lisa A.
Johnson Ruth A.
Viker Kimberly B.
Hafner Kari A.
Jenkins Robert B.
Riegert-Johnson Douglas L.
Smyrk Thomas C.
Litzelman Kristin
Seo Songwon
Gangnon Ronald E.
Engelman Corinne D.
Rider David N.
Vanderboom Russell J.
Thibodeau Stephen N.
Petersen Gloria M.
Skinner Halcyon G.

November 2013

Colorectal cancer (CRC) tumor DNA is characterized by chromosomal damage termed chromosomal instabil...

Average number of copy number gains, losses and percent genome altered (PGA) across TCGA cancer types and the three exemplar tumors selected for our study.

Soroush Samadian (5028617)
Jeff P. Bruce (724950)
Trevor J. Pugh (3141498)

March 2018

Average number of copy number gains, losses and percent genome altered (PGA) across TCGA cancer t...

Correlation of chromosomal instability, telomere length and telomere maintenance in microsatellite stable rectal cancer: a molecular subclass of rectal cancer.

Lisa A Boardman
Ruth A Johnson
Kimberly B Viker
Kari A Hafner
Robert B Jenkins
Douglas L Riegert-Johnson
Thomas C Smyrk
Kristin Litzelman
Songwon Seo
Ronald E Gangnon
Corinne D Engelman
David N Rider
Russell J Vanderboom
Stephen N Thibodeau
Gloria M Petersen
Halcyon G Skinner

Colorectal cancer (CRC) tumor DNA is characterized by chromosomal damage termed chromosomal instabil...

Chromosomal imbalance in colorectal cancer

Davison, E J

January 2005

A genomic microarray with a genome wide resolution of ~1Mb was constructed, consisting of approximat...

Comprehensive analysis of copy number aberrations in microsatellite stable colon cancer in view of stromal component

Alonso Aguado, Maria Henar
Aussó, Susanna
Lopez-Dóriga, Adriana
Cordero Romera, David
Guinó, Elisabet
Solé Acha, Xavier
Barenys de Lacha, Mercé
Oca Burguete, Javier de
Capellá, G. (Gabriel)
Salazar Soler, Ramón
Sanz Pamplona, Rebeca
Moreno Aguado, Víctor

Background: Somatic copy number aberrations (CNA) are common acquired changes in cancer cells playin...

Number of clones in human tumors.

Franck Raynaud (5745788)
Marco Mina (158993)
Daniele Tavernari (5745791)
Giovanni Ciriello (158991)

September 2018

A) Number of clones in human tumors within each tumor type. Tumor types are ranked by median number ...

Lymph node status of PSCCs.

Susannah La-Touche (2269885)
Christophe Lemetre (505278)
Maryou Lambros (502435)
Elzbieta Stankiewicz (355292)
Charlotte K. Y. Ng (695361)
Britta Weigelt (40755)
Ramzi Rajab (2269882)
Brendan Tinwell (2269873)
Cathy Corbishley (2269879)
Nick Watkin (2269876)
Dan Berney (2269870)
Jorge S. Reis-Filho (265332)

February 2016

Fishers Exact plots of differential copy number gains and losses or amplifications/ high level ga...

Genomic Gains and Losses in Pancreatic Cancer.

Jian-Wei Liang (673513)
Zhi-Zhou Shi (673514)
Tian-Yun Shen (673515)
Xu Che (673516)
Zheng Wang (25883)
Su-Sheng Shi (673517)
Xin Xu (11989)
Yan Cai (298695)
Ping Zhao (47228)
Cheng-Feng Wang (673518)
Zhi-Xiang Zhou (673519)
Ming-Rong Wang (648367)

December 2014

Note: 1: when two or more adjacent cytobands have copy number changes at a frequency above 30% (g...

Comparison of chromosomal aberrations in CDC and UUT-UC tumors in percent.

Frank Becker (203176)
Kerstin Junker (475098)
Martin Parr (475099)
Arndt Hartmann (42756)
Susanne Füssel (475100)
Marieta Toma (475101)
Rainer Grobholz (475102)
Thomas Pflugmann (475103)
Bernd Wullich (44381)
Arne Strauss (475104)
Carl Ludwig Behnes (475105)
Wolfgang Otto (31658)
Michael Stöckle (44383)
Volker Jung (78021)

October 2013

Losses of chromosomal material are shown on the left side, gains on the right side.</p

Cumulative rates of gain and loss for tumors analyzed by CGH (red, 4 BRCA2-mutant tumors; black, 24 BRCAX tumors).

Audrey Rouault (292491)
Guillaume Banneau (292493)
Gaëtan MacGrogan (29233)
Natalie Jones (292495)
Nabila Elarouci (292496)
Emmanuelle Barouk-Simonet (292497)
Laurence Venat (292498)
Isabelle Coupier (292499)
Eric Letouzé (167040)
Aurélien de Reyniès (17289)
Françoise Bonnet (292500)
Richard Iggo (292501)
Nicolas Sévenet (292502)
Michel Longy (29236)

February 2013

A, All chromosomes; B, Chromosome 13; C, Chromosome 14. Each vertical line in B & C corresponds t...

Progression from colorectal adenoma to carcinoma is associated with non-random chromosomal gains as detected by comparative genomic hybridisation

Meijer, G A
Hermsen, M A
Baak, J P
van Diest, P J
Meuwissen, S G
Beliën, J A
Hoovers, J M
Joenje, H
Snijders, P J
Walboomers, J M

December 1998

AIMS: Chromosomal gains and losses were surveyed by comparative genomic hybridisation (CGH) in a ser...

Exome-wide simulated copy number profiles at a range of tumor purities yield expected allelic and copy number ratios.

Soroush Samadian (5028617)
Jeff P. Bruce (724950)
Trevor J. Pugh (3141498)

March 2018

Allelic ratio for allele-specific copy number gain (A) and loss (B) events at heterozygous SNP lo...

Cancer cells preferentially lose small chromosomes

Duijf, Pascal
Schultz, Nikolaus
Benezra, Robert

January 2012

Genetic and genomic aberrations are the primary cause of cancer. Chromosome missegregation leads to ...

Copy-number aberrations in mammary carcinomas from (SD×COP)F1 rats.

Mayumi Nishimura (455516)
Kazuhiro Daino (203837)
Maki Fukuda (11272926)
Ikuya Tanaka (11272929)
Hitomi Moriyama (11272932)
Kaye Showler (11272935)
Yukiko Nishimura (11272938)
Masaru Takabatake (3202710)
Toshiaki Kokubo (11272941)
Atsuko Ishikawa (11272944)
Kazumasa Inoue (3701080)
Masahiro Fukushi (3202707)
Shizuko Kakinuma (763026)
Tatsuhiko Imaoka (455512)
Yoshiya Shimada (203843)

August 2021

A, Chromosomal losses (green) and gains (red) in 21 tumors. Aberrations observed in the same carcino...

Comparative genomic hybridization.

Prashant Kumar (119326)
Malini Mukherjee (119327)
Jacob P. S. Johnson (119328)
Milan Patel (119329)
Bing Huey (119330)
Donna G. Albertson (119331)
Karl Simin (2706)

November 2012

TBP tumors (n = 8) and TP tumors (n = 10) were analyzed by array CGH to identify copy number aber...

Correlation of Chromosomal Instability, Telomere Length and Telomere Maintenance in Microsatellite Stable Rectal Cancer: A Molecular Subclass of Rectal Cancer

Boardman Lisa A.
Johnson Ruth A.
Viker Kimberly B.
Hafner Kari A.
Jenkins Robert B.
Riegert-Johnson Douglas L.
Smyrk Thomas C.
Litzelman Kristin
Seo Songwon
Gangnon Ronald E.
Engelman Corinne D.
Rider David N.
Vanderboom Russell J.
Thibodeau Stephen N.
Petersen Gloria M.
Skinner Halcyon G.

November 2013

Colorectal cancer (CRC) tumor DNA is characterized by chromosomal damage termed chromosomal instabil...

Average number of copy number gains, losses and percent genome altered (PGA) across TCGA cancer types and the three exemplar tumors selected for our study.

Soroush Samadian (5028617)
Jeff P. Bruce (724950)
Trevor J. Pugh (3141498)

March 2018

Average number of copy number gains, losses and percent genome altered (PGA) across TCGA cancer t...

Correlation of chromosomal instability, telomere length and telomere maintenance in microsatellite stable rectal cancer: a molecular subclass of rectal cancer.

Lisa A Boardman
Ruth A Johnson
Kimberly B Viker
Kari A Hafner
Robert B Jenkins
Douglas L Riegert-Johnson
Thomas C Smyrk
Kristin Litzelman
Songwon Seo
Ronald E Gangnon
Corinne D Engelman
David N Rider
Russell J Vanderboom
Stephen N Thibodeau
Gloria M Petersen
Halcyon G Skinner

Colorectal cancer (CRC) tumor DNA is characterized by chromosomal damage termed chromosomal instabil...

Chromosomal imbalance in colorectal cancer

Davison, E J

January 2005

A genomic microarray with a genome wide resolution of ~1Mb was constructed, consisting of approximat...

Comprehensive analysis of copy number aberrations in microsatellite stable colon cancer in view of stromal component

Alonso Aguado, Maria Henar
Aussó, Susanna
Lopez-Dóriga, Adriana
Cordero Romera, David
Guinó, Elisabet
Solé Acha, Xavier
Barenys de Lacha, Mercé
Oca Burguete, Javier de
Capellá, G. (Gabriel)
Salazar Soler, Ramón
Sanz Pamplona, Rebeca
Moreno Aguado, Víctor

Background: Somatic copy number aberrations (CNA) are common acquired changes in cancer cells playin...

Number of clones in human tumors.

Franck Raynaud (5745788)
Marco Mina (158993)
Daniele Tavernari (5745791)
Giovanni Ciriello (158991)

September 2018

A) Number of clones in human tumors within each tumor type. Tumor types are ranked by median number ...

Lymph node status of PSCCs.

Susannah La-Touche (2269885)
Christophe Lemetre (505278)
Maryou Lambros (502435)
Elzbieta Stankiewicz (355292)
Charlotte K. Y. Ng (695361)
Britta Weigelt (40755)
Ramzi Rajab (2269882)
Brendan Tinwell (2269873)
Cathy Corbishley (2269879)
Nick Watkin (2269876)
Dan Berney (2269870)
Jorge S. Reis-Filho (265332)

February 2016

Fishers Exact plots of differential copy number gains and losses or amplifications/ high level ga...

Clone gains/losses by ALT activity.

Abstract

Extracted data

Clone gains/losses by ALT activity.

Abstract

Extracted data

Related items

Related items