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MDS plot computed from F<sub>ST</sub> values between Malagasy populations and the Comoros based on 17 Y-STR data.

Mélanie Capredon (488964)
Nicolas Brucato (488965)
Laure Tonasso (488966)
Valérie Choesmel-Cadamuro (488967)
François-Xavier Ricaut (488968)
Harilanto Razafindrazaka (488969)
Andriamihaja Bakomalala Rakotondrabe (488970)
Mamisoa Adelta Ratolojanahary (488971)
Louis-Paul Randriamarolaza (488972)
Bernard Champion (488973)
Jean-Michel Dugoujon (157297)

Publication date

November 2013

DOI

10.1371/journal.pone.0080932.g004

Abstract

<p>MDS plot computed from F<sub>ST</sub> values between Malagasy populations and the Comoros based on 17 Y-STR data.</p

Extracted data

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Results of population differentiation tests for the Madagascar dataset analyses.

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Carine Brouat (179756)

March 2012

<p>The <i>p</i>-values associated with each of the two tests (Fdist2 <a href="http://www.plosone.org...

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The measure of goodness of fit in MDS is called stress and stress values below 0.15 represent a good...

MDS plot based on haplogroup F<sub>ST</sub> distances (MAU = Mauritius; MAD = Madagascar; IND = India; EAS = East Asia; SEA = Southeast Asia; AFR = Africa; AUS = Austronesia; EUR = Europe).

Rosa Fregel (164738)
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<p>MDS plot based on haplogroup F<sub>ST</sub> distances (MAU = Mauritius; MAD = Madagascar; IND...

A MDS plot of FST estimates based on mtDNA HVS1 sequences (np 16024–16400) for Indigenous Caribbean and comparative Central and South American populations.

Jada Benn Torres (186339)
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Jill B. Gaieski (811146)
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<p>The stress value of the plot is 9.8%. Data points are labeled with the population name and color-...

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<p>A MDS plot based on Rst between the Liaoning Han population and five reference populations (the L...

MDS plot based on the pairwise R<sub>ST</sub> genetic distance matrix (Stress = 0.134).

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<p>MDS plot based on the pairwise R<sub>ST</sub> genetic distance matrix (Stress = 0.134).</p

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March 2019

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Miroslava Derenko (103534)
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<p>The populations from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.008067...

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Summary of the parameters used for modeling of neglected tropical diseases (NTD) program in Madagasc...

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<p>A) MDS based on mtDNA (Φ<sub>ST</sub>): stress: 0.064; B) MDS based on microsatellites (F<sub>ST<...

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Lila Rahalison (179749)
Soanandrasana Rahelinirina (179752)
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<p>The <i>p</i>-values associated with each of the two tests (Fdist2 <a href="http://www.plosone.org...

Non-metric MDS plot generated with PAST for mtDNA control region sequences for all haplogroups among 22 Bolivian and Peruvian populations.

José Raul Sandoval (457096)
Daniela R. Lacerda (457097)
Marilza S. A. Jota (457098)
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Oscar Acosta (457101)
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<p>It was used Reynolds’ Φ<i>st</i> genetic distances among populations. Uros: red triangles, Aymara...

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Irene Moutsouri (11320657)
Anna Keravnou (3716713)
Panayiotis Manoli (4114906)
Stefania Bertoncini (846557)
Kyriaki Michailidou (205130)
Vasilis Christofi (4114909)
Stavroulla Xenophontos (11320660)
Marios A. Cariolou (4114894)
Evy Bashiardes (4114912)

August 2021

The measure of goodness of fit in MDS is called stress and stress values below 0.15 represent a good...

MDS plot based on haplogroup F<sub>ST</sub> distances (MAU = Mauritius; MAD = Madagascar; IND = India; EAS = East Asia; SEA = Southeast Asia; AFR = Africa; AUS = Austronesia; EUR = Europe).

Rosa Fregel (164738)
Krish Seetah (543940)
Eva Betancor (543941)
Nicolás M. Suárez (2805151)
Diego Calaon (543942)
Saša Čaval (543943)
Anwar Janoo (543944)
Jose Pestano (3285567)

March 2014

<p>MDS plot based on haplogroup F<sub>ST</sub> distances (MAU = Mauritius; MAD = Madagascar; IND...

A MDS plot of FST estimates based on mtDNA HVS1 sequences (np 16024–16400) for Indigenous Caribbean and comparative Central and South American populations.

Jada Benn Torres (186339)
Miguel G. Vilar (230795)
Gabriel A. Torres (811145)
Jill B. Gaieski (811146)
Ricardo Bharath Hernandez (811147)
Zoila E. Browne (811148)
Marlon Stevenson (811149)
Wendell Walters (811150)
Theodore G. Schurr (24842)

October 2015

<p>The stress value of the plot is 9.8%. Data points are labeled with the population name and color-...

A MDS plot based on Rst between the Liaoning Han population and five reference populations (the Liaoning Han population is marked with yellow).

Jun Yao (9646)
Bao-jie Wang (417236)

August 2016

<p>A MDS plot based on Rst between the Liaoning Han population and five reference populations (the L...

MDS plot based on the pairwise R<sub>ST</sub> genetic distance matrix (Stress = 0.134).

Teresinha Palha (151947)
Leonor Gusmão (151951)
Elzemar Ribeiro-Rodrigues (151956)
João Farias Guerreiro (151959)
Ândrea Ribeiro-dos-Santos (151961)
Sidney Santos (151965)

July 2012

<p>MDS plot based on the pairwise R<sub>ST</sub> genetic distance matrix (Stress = 0.134).</p

A MDS plot created for Beata dataset to show the distribution of its cases and controls.

Nabila Kazmi (2547892)
Tom R. Gaunt (95274)

March 2016

<p>A MDS plot created for Beata dataset to show the distribution of its cases and controls.</p

MDS plot based on haplogroup frequency distances.

Rosa Fregel (164738)
Alejandra C. Ordóñez (6490220)
Jonathan Santana-Cabrera (6490223)
Vicente M. Cabrera (168407)
Javier Velasco-Vázquez (6490226)
Verónica Alberto (6490229)
Marco A. Moreno-Benítez (6490232)
Teresa Delgado-Darias (6490235)
Amelia Rodríguez-Rodríguez (6490238)
Juan C. Hernández (2485792)
Jorge Pais (6490241)
Rafaela González-Montelongo (6490244)
José M. Lorenzo-Salazar (6490247)
Carlos Flores (4224)
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Nuria Álvarez-Rodríguez (6490253)
Beth Shapiro (30433)
Matilde Arnay (6490256)
Carlos D. Bustamante (51881)

March 2019

A) MDS analysis comparing the individual ancient populations (FUI = Fuerteventura; GCI = Gran Canari...

MDS plot based on Fst statistics calculated from complete mtDNA sequences for population samples from Iran, Anatolia, Caucasus, and Europe.

Miroslava Derenko (103534)
Boris Malyarchuk (103532)
Ardeshir Bahmanimehr (421605)
Galina Denisova (182374)
Maria Perkova (103538)
Shirin Farjadian (485143)
Levon Yepiskoposyan (485144)

November 2013

<p>The populations from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.008067...

Thirsa Kraaijenbrink (533093)
Kristiaan J. van der Gaag (421078)
Sofia B. Zuniga (533094)
Yali Xue (266641)
Denise R. Carvalho-Silva (533095)
Chris Tyler-Smith (31857)
Mark A. Jobling (254536)
Emma J. Parkin (533096)
Bing Su (51332)
Hong Shi (177669)
Chun-Jie Xiao (331965)
Wen-Ru Tang (533097)
V. K. Kashyap (533098)
R. Trivedi (533099)
T. Sitalaximi (533100)
Jheelam Banerjee (533101)
Karma Tshering of Gaselô (533102)
Nirmal M. Tuladhar (533103)
Jean-Robert M. L. Opgenort (533104)
George L. van Driem (533105)
Guido Barbujani (248880)
Peter de Knijff (266636)

March 2014

<p>Populations have been colour coded according to linguistic phylum and geographical origin, as is ...

Summary of the parameters used for modeling of neglected tropical diseases (NTD) program in Madagascar.

Jan-Walter De Neve (4221829)
Rija L. Andriantavison (6160163)
Kevin Croke (4100230)
Johannes Krisam (3710305)
Voahirana H. Rajoela (6160166)
Rary A. Rakotoarivony (6160169)
Valérie Rambeloson (6160172)
Linda Schultz (6160175)
Jumana Qamruddin (3803191)
Stéphane Verguet (359569)

December 2018

Summary of the parameters used for modeling of neglected tropical diseases (NTD) program in Madagasc...

Non-metric multidimensional scaling plot (MDS) based on Slatkin’s linearized distances among populations of <i>B</i>. <i>improvisus</i>.

Anna-Lisa Wrange (468985)
Gregory Charrier (2180958)
Anne Thonig (2180960)
Magnus Alm Rosenblad (10341)
Anders Blomberg (57653)
Jonathan N. Havenhand (2180962)
Per R. Jonsson (362739)
Carl André (227715)

January 2016

<p>A) MDS based on mtDNA (Φ<sub>ST</sub>): stress: 0.064; B) MDS based on microsatellites (F<sub>ST<...

Plots of the multidimesional (MDS) scaling analyses of genetic distances inferred from the forensics datasets.

Nuno M. Silva (119069)
Luísa Pereira (3796522)
Estella S. Poloni (119072)
Mathias Currat (5277)

November 2012

<p>A: MDS of genetic distances computed on the Frequency dataset (stress = 0.18); B: MDS of genetic ...

MDS plot from linearized Slatkin Fst values of S4A Table.

Endre Neparáczki (3934526)
Zoltán Maróti (2550670)
Tibor Kalmár (2550676)
Klaudia Kocsy (3934514)
Kitti Maár (5870816)
Péter Bihari (3934517)
István Nagy (147904)
Erzsébet Fóthi (3854032)
Ildikó Pap (849731)
Ágnes Kustár (5870819)
György Pálfi (478028)
István Raskó (442432)
Albert Zink (491969)
Tibor Török (3934523)

October 2018

Only populations from Table 1 were depicted, which showed close Fst and SHD distance values to the C...

Results of population differentiation tests for the Madagascar dataset analyses.

Charlotte Tollenaere (106922)
Svilena Ivanova (179738)
Jean-Marc Duplantier (179741)
Anne Loiseau (179746)
Lila Rahalison (179749)
Soanandrasana Rahelinirina (179752)
Carine Brouat (179756)

March 2012

<p>The <i>p</i>-values associated with each of the two tests (Fdist2 <a href="http://www.plosone.org...

Non-metric MDS plot generated with PAST for mtDNA control region sequences for all haplogroups among 22 Bolivian and Peruvian populations.

José Raul Sandoval (457096)
Daniela R. Lacerda (457097)
Marilza S. A. Jota (457098)
Alberto Salazar-Granara (457099)
Pedro Paulo R. Vieira (457100)
Oscar Acosta (457101)
Cinthia Cuellar (457102)
Susana Revollo (457103)
Ricardo Fujita (457104)
Fabrício R. Santos (224328)

September 2013

<p>It was used Reynolds’ Φ<i>st</i> genetic distances among populations. Uros: red triangles, Aymara...

Multidimensional scaling plot between Cypriots and populations of interest.

Irene Moutsouri (11320657)
Anna Keravnou (3716713)
Panayiotis Manoli (4114906)
Stefania Bertoncini (846557)
Kyriaki Michailidou (205130)
Vasilis Christofi (4114909)
Stavroulla Xenophontos (11320660)
Marios A. Cariolou (4114894)
Evy Bashiardes (4114912)

August 2021

The measure of goodness of fit in MDS is called stress and stress values below 0.15 represent a good...