Sequencing results of autologous virus of regions in HIV-proteins Gag, Pol and Nef.

<p>Top scale indicates amino acid position according to HXB2 sequence of Gag (A), Pol (B) and Nef (C). On the left side are depicted: ID of individuals and years of consecutive blood draws. Boxes indicate the sequenced region and numbers next to boxes the exact amino acid position. 1 bar in a box stands for 1 amino acid substitution (including mixed bases) that either does not change the immune response (white box) or leads to viral escape (black box), a shift in immunodominance (grey box) or a de-novo response towards an escape mutation (checked box). For sequences in detail: supporting information <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0080045#pone.0080045.s002" target="_blank">Table S2</a>.