<p>The fold change (FC) differences measured by qRT-PCR of selected genes in mutants compared to normals are shown at different ages. Genes belong to different functional categories: <b>A</b>) pro-death members of the extrinsic apoptotic pathway <i>CASP8</i>, <i>TNFA</i>, <i>TNFRSF1A</i>, <i>TRADD</i>; <b>B</b>) pro-survival <i>STAT3</i>, <i>NTF3</i>, <i>XIAP</i>, <i>IL10</i>. An asterisk indicates statistical significance; bars show SD of biological triplicates. Note that values on the Y-axis are not the same for all graphs, due to the highly variable FC differences in gene expression.</p
<p>Y-axis: log<sub>2</sub> of estimated fold change between <i>Osam1</i> and wild type. X- axis: tes...
<p>For each gene, the maximal fold change value (<i>rds</i>:Nrl-eGFP vs. Nrl-eGFP) between P6 and P2...
<p>*P-value <0.01</p><p>**P-value<0.001</p><p>***P-value<0.0001</p><p>Genes that were found to be st...
<p>The left side of the table presents the NF-қB-controlled genes that are upregulated (+ fold-chang...
<p>The left side of the table presents the NF-қB-controlled genes that are upregulated (+ fold-chang...
<p>Significant p values among groups.</p><p><b>CCL2</b>: B>A (p<0.01), B>C(p<0.05).</p><p><b>CXCL10<...
Volcano plots showing significantly downregulated (the thresholds are FDR -0.5) genes in green and ...
<p>Quantitative real time PCR plot of gene expression in RNA isolated from <i>Sd/Sd</i> (black bars)...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>(A) Distribution of fold changes in gene expression (<i>y-axis</i>, log<sub>2</sub> scale) for ge...
<p>Fold changes are expressed as the ratio of gene expression between XGC and YRC after normalizatio...
<p>Genes with a significant interaction effect that are down-regulated in KAR and up-regulated in NO...
<p>Bar plots and inset scatter plot show a comparison of RNA-seq and RT-qPCR fold change values obta...
<p>Fold change (Log<sub>2</sub>FC) of eight differentially expressed genes using qRT-PCR for RNA-Seq...
<p>The values represent log<sub>2</sub>fold change in MCF10.DCIS, SUM102 and SUM225 compared to expr...
<p>Y-axis: log<sub>2</sub> of estimated fold change between <i>Osam1</i> and wild type. X- axis: tes...
<p>For each gene, the maximal fold change value (<i>rds</i>:Nrl-eGFP vs. Nrl-eGFP) between P6 and P2...
<p>*P-value <0.01</p><p>**P-value<0.001</p><p>***P-value<0.0001</p><p>Genes that were found to be st...
<p>The left side of the table presents the NF-қB-controlled genes that are upregulated (+ fold-chang...
<p>The left side of the table presents the NF-қB-controlled genes that are upregulated (+ fold-chang...
<p>Significant p values among groups.</p><p><b>CCL2</b>: B>A (p<0.01), B>C(p<0.05).</p><p><b>CXCL10<...
Volcano plots showing significantly downregulated (the thresholds are FDR -0.5) genes in green and ...
<p>Quantitative real time PCR plot of gene expression in RNA isolated from <i>Sd/Sd</i> (black bars)...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>(A) Distribution of fold changes in gene expression (<i>y-axis</i>, log<sub>2</sub> scale) for ge...
<p>Fold changes are expressed as the ratio of gene expression between XGC and YRC after normalizatio...
<p>Genes with a significant interaction effect that are down-regulated in KAR and up-regulated in NO...
<p>Bar plots and inset scatter plot show a comparison of RNA-seq and RT-qPCR fold change values obta...
<p>Fold change (Log<sub>2</sub>FC) of eight differentially expressed genes using qRT-PCR for RNA-Seq...
<p>The values represent log<sub>2</sub>fold change in MCF10.DCIS, SUM102 and SUM225 compared to expr...
<p>Y-axis: log<sub>2</sub> of estimated fold change between <i>Osam1</i> and wild type. X- axis: tes...
<p>For each gene, the maximal fold change value (<i>rds</i>:Nrl-eGFP vs. Nrl-eGFP) between P6 and P2...
<p>*P-value <0.01</p><p>**P-value<0.001</p><p>***P-value<0.0001</p><p>Genes that were found to be st...