MS analysis and database searching of the 13 spots with differential phosphorylation level in samples from anti-TG2 treated cells and from control-IgG treated cells.

Tools for investigating cellular signaling networks by mass spectrometry

Curran, Timothy Gordon

January 2014

Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biological Engineering, 2014.Th...

Identification of proteins differentially represented in OP-A-treated and control A375 melanoma cells as revealed by 2-DE and nanoLC-ESI-LIT-MS/MS analysis.

Carlo Rodolfo (3390956)
Mariapina Rocco (3390950)
Lucia Cattaneo (770862)
Maria Tartaglia (3390953)
Mauro Sassi (1568323)
Patrizia Aducci (531449)
Andrea Scaloni (79922)
Lorenzo Camoni (531446)
Mauro Marra (770868)

December 2016

Spot numbering corresponds to that reported in <a href="http://www.plosone.org/article/info:doi/1...

RESEARCH ARTICLE Optimizing search conditions for the mass fingerprint-based identification of proteins

Elena Ossipova
David Fenyö
Jan Eriksson

January 2005

The two central problems in protein identification by searching a protein sequence collection with M...

Selected spots for MS analysis.

Gaetana Paolella (305616)
Ivana Caputo (305607)
Anna Marabotti (68229)
Marilena Lepretti (305613)
Anna Maria Salzano (504202)
Andrea Scaloni (79922)
Monica Vitale (504203)
Nicola Zambrano (504204)
Daniele Sblattero (251886)
Carla Esposito (305620)

December 2013

(A) Coloured circles indicate the position on Pro-Q Diamond-stained gels of the 13 protein...

Evaluation of phosphopeptide enrichment strategies for quantitative TMT analysis of complex network dynamics in cancer-associated cell signalling

Lombardi, Benedetta
Rendell, Nigel
Edwards, Mina
Katan, Matilda
Zimmermann, Jasminka Godovac

March 2015

AbstractDefining alterations in signalling pathways in normal and malignant cells is becoming a majo...

Evaluation of phosphopeptide enrichment strategies for quantitative TMT analysis of complex network dynamics in cancer-associated cell signalling

Benedetta Lombardi
Nigel Rendell
Mina Edwards
Matilda Katan
Jasminka Godovac Zimmermann

March 2015

Defining alterations in signalling pathways in normal and malignant cells is becoming a major field ...

Mass spectrometry analysis of glutathionylated proteins.

Tatiana Armeni (293122)
Luisa Ercolani (293123)
Lorena Urbanelli (293124)
Alessandro Magini (184184)
Francesca Magherini (293125)
Armanda Pugnaloni (293126)
Francesco Piva (72402)
Alessandra Modesti (293127)
Carla Emiliani (184188)
Giovanni Principato (293128)

February 2013

aSpot numbers match those reported in the representative 2-DE images shown in <a href="http://www...

Quantitative mass spectrometric approaches to study the role of protein phosphorylation in cell signaling

Mayya, Viveka

January 2008

Protein phosphorylation is the most common reversible post-translational modification to modulate pr...

Flowchart of the 2-DE-based phosphorylation site identification method.

Bing Zhang (129)
Jin-Yuan Liu (230424)

March 2013

Mass spectra and accurate amino acid sequence of the selected protein are analyzed by FindMod too...

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites

Bauer, Manuel
Ahrné, Erik
Baron, Anna P.
Glatter, Timo
Fava, Luca L.
Santamaria, Anna
Nigg, Erich A.
Schmidt, Alexander

January 2015

The data described here provide a systematic performance evaluation of popular data-dependent (DDA) ...

Dataset from a proteomics analysis of tumor antigens shared between an allogenic tumor cell lysate vaccine and pancreatic tumor tissue.

Stingl, C.
Lau, S. P.
van der Burg, S. H.
Aerts, J. G.
van Eijck, C. H.J.
Luider, T. M.

October 2022

The data described was acquired as part of a clinical study with the aim to investigate the potentia...

Mass spectrometry analysis identifies SOX10 phosphorylation sites.

Julia C. Cronin (4746906)
Stacie K. Loftus (270588)
Laura L. Baxter (278303)
Steve Swatkoski (4746909)
Marjan Gucek (82810)
William J. Pavan (42626)

January 2018

A. Workflow schematic of SOX10 protein analysis by mass spectrometry. 501mel cells were treated w...

Analysing proteomic data

Barrett, John
Brophy, Peter M.
Hamilton, Joanne V.

April 2005

The rapid growth of proteomics has been made possible by the development of reproducible 2D gels and...

Mass spectrometry (MS) based proteomics coupled with co-immunoprecipitation for Pi treated and TGF-β1 cells.

Xiaoying Tan (212592)
Xingbo Xu (212588)
Michael Zeisberg (72696)
Elisabeth M. Zeisberg (208764)

January 2016

(A) Protein complex from phosphate (3mM for 72 hours) and TGFβ (10ng/ml TGFβ1 for 4 days) treated...

Identification of Differentially Expressed protein spots.

Xiaolin Dong (301588)
Yifan Zhai (431073)
Meiying Hu (114346)
Guohua Zhong (129387)
Wanjun Huang (431074)
Zhihua Zheng (431075)
Pengfei Han (136692)

July 2013

aSpot No. is the unique number of the position where the spot display in the master gel;bT...

Tools for investigating cellular signaling networks by mass spectrometry

Curran, Timothy Gordon

January 2014

Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biological Engineering, 2014.Th...

Identification of proteins differentially represented in OP-A-treated and control A375 melanoma cells as revealed by 2-DE and nanoLC-ESI-LIT-MS/MS analysis.

Carlo Rodolfo (3390956)
Mariapina Rocco (3390950)
Lucia Cattaneo (770862)
Maria Tartaglia (3390953)
Mauro Sassi (1568323)
Patrizia Aducci (531449)
Andrea Scaloni (79922)
Lorenzo Camoni (531446)
Mauro Marra (770868)

December 2016

Spot numbering corresponds to that reported in <a href="http://www.plosone.org/article/info:doi/1...

RESEARCH ARTICLE Optimizing search conditions for the mass fingerprint-based identification of proteins

Elena Ossipova
David Fenyö
Jan Eriksson

January 2005

The two central problems in protein identification by searching a protein sequence collection with M...

Selected spots for MS analysis.

Gaetana Paolella (305616)
Ivana Caputo (305607)
Anna Marabotti (68229)
Marilena Lepretti (305613)
Anna Maria Salzano (504202)
Andrea Scaloni (79922)
Monica Vitale (504203)
Nicola Zambrano (504204)
Daniele Sblattero (251886)
Carla Esposito (305620)

December 2013

(A) Coloured circles indicate the position on Pro-Q Diamond-stained gels of the 13 protein...

Evaluation of phosphopeptide enrichment strategies for quantitative TMT analysis of complex network dynamics in cancer-associated cell signalling

Lombardi, Benedetta
Rendell, Nigel
Edwards, Mina
Katan, Matilda
Zimmermann, Jasminka Godovac

March 2015

AbstractDefining alterations in signalling pathways in normal and malignant cells is becoming a majo...

Evaluation of phosphopeptide enrichment strategies for quantitative TMT analysis of complex network dynamics in cancer-associated cell signalling

Benedetta Lombardi
Nigel Rendell
Mina Edwards
Matilda Katan
Jasminka Godovac Zimmermann

March 2015

Defining alterations in signalling pathways in normal and malignant cells is becoming a major field ...

Mass spectrometry analysis of glutathionylated proteins.

Tatiana Armeni (293122)
Luisa Ercolani (293123)
Lorena Urbanelli (293124)
Alessandro Magini (184184)
Francesca Magherini (293125)
Armanda Pugnaloni (293126)
Francesco Piva (72402)
Alessandra Modesti (293127)
Carla Emiliani (184188)
Giovanni Principato (293128)

February 2013

aSpot numbers match those reported in the representative 2-DE images shown in <a href="http://www...

Quantitative mass spectrometric approaches to study the role of protein phosphorylation in cell signaling

Mayya, Viveka

January 2008

Protein phosphorylation is the most common reversible post-translational modification to modulate pr...

Flowchart of the 2-DE-based phosphorylation site identification method.

Bing Zhang (129)
Jin-Yuan Liu (230424)

March 2013

Mass spectra and accurate amino acid sequence of the selected protein are analyzed by FindMod too...

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites

Bauer, Manuel
Ahrné, Erik
Baron, Anna P.
Glatter, Timo
Fava, Luca L.
Santamaria, Anna
Nigg, Erich A.
Schmidt, Alexander

January 2015

The data described here provide a systematic performance evaluation of popular data-dependent (DDA) ...

Dataset from a proteomics analysis of tumor antigens shared between an allogenic tumor cell lysate vaccine and pancreatic tumor tissue.

Stingl, C.
Lau, S. P.
van der Burg, S. H.
Aerts, J. G.
van Eijck, C. H.J.
Luider, T. M.

October 2022

The data described was acquired as part of a clinical study with the aim to investigate the potentia...

Mass spectrometry analysis identifies SOX10 phosphorylation sites.

Julia C. Cronin (4746906)
Stacie K. Loftus (270588)
Laura L. Baxter (278303)
Steve Swatkoski (4746909)
Marjan Gucek (82810)
William J. Pavan (42626)

January 2018

A. Workflow schematic of SOX10 protein analysis by mass spectrometry. 501mel cells were treated w...

Analysing proteomic data

Barrett, John
Brophy, Peter M.
Hamilton, Joanne V.

April 2005

The rapid growth of proteomics has been made possible by the development of reproducible 2D gels and...

Mass spectrometry (MS) based proteomics coupled with co-immunoprecipitation for Pi treated and TGF-β1 cells.

Xiaoying Tan (212592)
Xingbo Xu (212588)
Michael Zeisberg (72696)
Elisabeth M. Zeisberg (208764)

January 2016

(A) Protein complex from phosphate (3mM for 72 hours) and TGFβ (10ng/ml TGFβ1 for 4 days) treated...

Identification of Differentially Expressed protein spots.

Xiaolin Dong (301588)
Yifan Zhai (431073)
Meiying Hu (114346)
Guohua Zhong (129387)
Wanjun Huang (431074)
Zhihua Zheng (431075)
Pengfei Han (136692)

July 2013

aSpot No. is the unique number of the position where the spot display in the master gel;bT...

Tools for investigating cellular signaling networks by mass spectrometry

Curran, Timothy Gordon

January 2014

Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biological Engineering, 2014.Th...

Identification of proteins differentially represented in OP-A-treated and control A375 melanoma cells as revealed by 2-DE and nanoLC-ESI-LIT-MS/MS analysis.

Carlo Rodolfo (3390956)
Mariapina Rocco (3390950)
Lucia Cattaneo (770862)
Maria Tartaglia (3390953)
Mauro Sassi (1568323)
Patrizia Aducci (531449)
Andrea Scaloni (79922)
Lorenzo Camoni (531446)
Mauro Marra (770868)

December 2016

Spot numbering corresponds to that reported in <a href="http://www.plosone.org/article/info:doi/1...

RESEARCH ARTICLE Optimizing search conditions for the mass fingerprint-based identification of proteins

Elena Ossipova
David Fenyö
Jan Eriksson

January 2005

The two central problems in protein identification by searching a protein sequence collection with M...

MS analysis and database searching of the 13 spots with differential phosphorylation level in samples from anti-TG2 treated cells and from control-IgG treated cells.

Abstract

Extracted data

MS analysis and database searching of the 13 spots with differential phosphorylation level in samples from anti-TG2 treated cells and from control-IgG treated cells.

Abstract

Extracted data

Related items

Related items