<p>Standardized coefficients with 95% confidence intervals for the different predictor variables of structural (left) and non-structural (right) gene substitution rates. A and B show the coefficients from the first ANCOVA analysis, C and D show coefficients from the second ANCOVA analysis, and E and F show coefficients from the third ANCOVA analysis. Coefficients are indicated by the same symbols used in <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1003838#ppat-1003838-g001" target="_blank">Figures 1</a> and <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1003838#ppat-1003838-g002" target="_blank">2</a>. Dark coefficients correspond to significant substitution rate predictors (<i>P<...
<p>Best-fit models with the highest marginal log likelihood score for respective data sets are in bo...
<p>Each entry shows the probability of substitution (r) from one base (row) to another base (column)...
The high rates of RNA virus evolution are generally attributed to replication with error-prone RNA-d...
<p>For each ANCOVA analysis, the overall adjusted <i>R</i><sup>2</sup> () of the model is given alon...
<p>The significance of viruses with each target cell in the left column having higher log-scale mean...
<p>The significance of viruses with each target cell in the left column having higher log scale mean...
<p>Log scale mean substitution rate (log<sub>10</sub>(nucleotide substitutions/site/year, NS/S/Y)) e...
<p>Log scale mean substitution rate (log<sub>10</sub>(nucleotide substitutions/site/year, NS/S/Y)) e...
<p>Log scale mean nucleotide substitution rates (log<sub>10</sub>(nucleotide substitutions per site ...
<p>Histogram of substitution rates based on 14,790 orthologous mouse and human genes (black curve). ...
<p>Rates as a function of progression time and the slope of the CD4+ T cell count are shown in pink,...
<p><i>Arabis mosaic virus</i> (ArMV), <i>Bean pod mottle virus</i> (BPMV), <i>Broad bean wilt virus-...
The nonsynonymous substitution frequency (dN) values were plotted against the synonymous substitutio...
<p>Substitutions rates and tMRCAs of different lineages for influenza A and B NA genes<sup><a href="...
<p>Numbers of nucleotide substitutions (triangle and small dashed line), transitions (black circle a...
<p>Best-fit models with the highest marginal log likelihood score for respective data sets are in bo...
<p>Each entry shows the probability of substitution (r) from one base (row) to another base (column)...
The high rates of RNA virus evolution are generally attributed to replication with error-prone RNA-d...
<p>For each ANCOVA analysis, the overall adjusted <i>R</i><sup>2</sup> () of the model is given alon...
<p>The significance of viruses with each target cell in the left column having higher log-scale mean...
<p>The significance of viruses with each target cell in the left column having higher log scale mean...
<p>Log scale mean substitution rate (log<sub>10</sub>(nucleotide substitutions/site/year, NS/S/Y)) e...
<p>Log scale mean substitution rate (log<sub>10</sub>(nucleotide substitutions/site/year, NS/S/Y)) e...
<p>Log scale mean nucleotide substitution rates (log<sub>10</sub>(nucleotide substitutions per site ...
<p>Histogram of substitution rates based on 14,790 orthologous mouse and human genes (black curve). ...
<p>Rates as a function of progression time and the slope of the CD4+ T cell count are shown in pink,...
<p><i>Arabis mosaic virus</i> (ArMV), <i>Bean pod mottle virus</i> (BPMV), <i>Broad bean wilt virus-...
The nonsynonymous substitution frequency (dN) values were plotted against the synonymous substitutio...
<p>Substitutions rates and tMRCAs of different lineages for influenza A and B NA genes<sup><a href="...
<p>Numbers of nucleotide substitutions (triangle and small dashed line), transitions (black circle a...
<p>Best-fit models with the highest marginal log likelihood score for respective data sets are in bo...
<p>Each entry shows the probability of substitution (r) from one base (row) to another base (column)...
The high rates of RNA virus evolution are generally attributed to replication with error-prone RNA-d...