<p><b>A.</b> Venn diagram showing intersection of Pol III-bound annotated genes in four different cell types, H1 (red), HeLa (cyan), Human Foreskin Fibroblasts - HFF (green) and HEK293T cells (blue). <b>B–D.</b> Pol III QValFDR tracks at example tDNAs that are differentially bound in H1 cells (red) compared to HeLa (cyan) and HEK293 (blue) cells. Arrows mark the genes that differ in Pol III occupancy. Asterisks mark the tDNAs that are similarly occupied in all the cell types. The axes are as described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0085648#pone-0085648-g001" target="_blank">Figure 1</a>. <b>E–G.</b> Pol III QValFDR tracks at example Type II (<b>E</b>) and Type III (<b>F,</b>G) loci that are similarl...
<p>A) Examples of control cells with normal anaphase chromosome separation (n = 50). B) Anaphase bri...
<p>Vertical red dashed lines delimit the edges of cyan state chromatin in the region which condition...
<p>(A) Bar graph showing POLR2B (dark blue), GTF2B (light blue), POLR3D (red), and BRF2 (orange) ChI...
<p><b>A.</b> Venn diagram showing intersection of Pol III-bound regions with Nanog and Oct4 bound re...
<p><b>A–D</b>. Examples are shown of Pol III-bound genes that intersect with H3K27me3 (within 2 kb)....
<p><b>A.</b> Chromosome 6 tDNA cluster snapshot showing Pol III QValFDR (red), TFIIIC QValFDR (green...
<p>Class average maps of transcription factors at a 4-bound gene (red) or an average tDNA not bound ...
<p>Class average maps of histone marks and transcription factors at a 4-bound gene without Pol III (...
<p>Four lists of genes that were differentially expressed at least 1.5-fold between the indicated co...
<p><b>(A)</b> Venn diagram showing EBF1 and RBP-jκ occupancy sites specific to LCL (red) and Mutu I ...
<p>(A) Average signals over 11,217 genes with nonoverlapping TSSs (see <a href="http://www.plosbiolo...
Additional file 4. Comparative topology of H3K4me3 and RNA Pol II Ser5P, markers for transcriptional...
<div><p>(A–F) Immuno-FISH labeling shows the active form of PolII in regions of intermingling. Serin...
<p>(A) Conservation plot (top) showing the average similarity score at individual amino acid positio...
(A) Venn diagrams displaying overlap between DE genes and Pax3-bound loci in 1-day (top) and 6-day (...
<p>A) Examples of control cells with normal anaphase chromosome separation (n = 50). B) Anaphase bri...
<p>Vertical red dashed lines delimit the edges of cyan state chromatin in the region which condition...
<p>(A) Bar graph showing POLR2B (dark blue), GTF2B (light blue), POLR3D (red), and BRF2 (orange) ChI...
<p><b>A.</b> Venn diagram showing intersection of Pol III-bound regions with Nanog and Oct4 bound re...
<p><b>A–D</b>. Examples are shown of Pol III-bound genes that intersect with H3K27me3 (within 2 kb)....
<p><b>A.</b> Chromosome 6 tDNA cluster snapshot showing Pol III QValFDR (red), TFIIIC QValFDR (green...
<p>Class average maps of transcription factors at a 4-bound gene (red) or an average tDNA not bound ...
<p>Class average maps of histone marks and transcription factors at a 4-bound gene without Pol III (...
<p>Four lists of genes that were differentially expressed at least 1.5-fold between the indicated co...
<p><b>(A)</b> Venn diagram showing EBF1 and RBP-jκ occupancy sites specific to LCL (red) and Mutu I ...
<p>(A) Average signals over 11,217 genes with nonoverlapping TSSs (see <a href="http://www.plosbiolo...
Additional file 4. Comparative topology of H3K4me3 and RNA Pol II Ser5P, markers for transcriptional...
<div><p>(A–F) Immuno-FISH labeling shows the active form of PolII in regions of intermingling. Serin...
<p>(A) Conservation plot (top) showing the average similarity score at individual amino acid positio...
(A) Venn diagrams displaying overlap between DE genes and Pax3-bound loci in 1-day (top) and 6-day (...
<p>A) Examples of control cells with normal anaphase chromosome separation (n = 50). B) Anaphase bri...
<p>Vertical red dashed lines delimit the edges of cyan state chromatin in the region which condition...
<p>(A) Bar graph showing POLR2B (dark blue), GTF2B (light blue), POLR3D (red), and BRF2 (orange) ChI...