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Distribution of estimated MAFs of the selected SNPs.

Gwenola Tosser-Klopp (88023)
Philippe Bardou (463716)
Olivier Bouchez (104385)
Cédric Cabau (512751)
Richard Crooijmans (512752)
Yang Dong (234336)
Cécile Donnadieu-Tonon (512753)
André Eggen (47250)
Henri C. M. Heuven (180190)
Saadiah Jamli (512754)
Abdullah Johari Jiken (512755)
Christophe Klopp (120981)
Cynthia T. Lawley (171073)
John McEwan (45371)
Patrice Martin (512756)
Carole R. Moreno (512757)
Philippe Mulsant (407258)
Ibouniyamine Nabihoudine (512758)
Eric Pailhoux (91000)
Isabelle Palhière (512759)
Rachel Rupp (210779)
Julien Sarry (407256)
Brian L. Sayre (512760)
Aurélie Tircazes (512761)
Jun Wang (5906)
Wen Wang (6570)
Wenguang Zhang (112715)

Publication date

January 2014

DOI

10.1371/journal.pone.0086227.g004

Abstract

<p>The MAF for all the 60,000 selected SNPs was estimated based on the read counts for the two alleles.</p

Extracted data

Related items

Daniela Iamartino (4494811)
Ezequiel L. Nicolazzi (4494805)
Curtis P. Van Tassell (175167)
James M. Reecy (121998)
Eric R. Fritz-Waters (749611)
James E. Koltes (693905)
Stefano Biffani (483609)
Tad S. Sonstegard (175161)
Steven G. Schroeder (275942)
Paolo Ajmone-Marsan (159432)
Riccardo Negrini (234230)
Rolando Pasquariello (4494820)
Paola Ramelli (4494814)
Angelo Coletta (4494802)
José F. Garcia (792870)
Ahmad Ali (4494817)
Luigi Ramunno (363121)
Gianfranco Cosenza (646439)
Denise A. A. de Oliveira (4494796)
Marcela G. Drummond (257408)
Eduardo Bastianetto (4494793)
Alessandro Davassi (4494799)
Ali Pirani (4494808)
Fiona Brew (3845815)
John L. Williams (177826)

October 2017

<p>Distribution of SNP Minor Allele Frequency (MAF) for Mediterranean, Murrah, Jaffarabadi and Nili-...

Allele Frequencies

Hecht, Benjamin Charles
Matala, Andrew P.
Hess, Jon E.
Narum, Shawn R.

November 2015

Allele Frequencies - The frequency of the major allele (P) is indicated for each of 19,703 SNP loci ...

Genotype and allele distribution of MTHFR SNPs in relation to sperm count.

Nishi Gupta (347826)
Saumya Sarkar (275922)
Archana David (347829)
Pravin Kumar Gangwar (434447)
Richa Gupta (365179)
Gita Khanna (434448)
Satya Narayan Sankhwar (434449)
Anil Khanna (347831)
Singh Rajender (275924)

July 2013

<p>Genotype and allele distribution of MTHFR SNPs in relation to sperm count.</p

Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.

Jan G. A. M. L. Uitdewilligen (411315)
Anne-Marie A. Wolters (411316)
Bjorn B. D’hoop (411317)
Theo J. A. Borm (411318)
Richard G. F. Visser (52153)
Herman J. van Eck (411319)

May 2013

<p>Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.</p

Distribution of SNP minor allele frequencies.

Luyang Sun (433243)
Shikai Liu (245897)
Ruijia Wang (644202)
Yanliang Jiang (245893)
Yu Zhang (12946)
Jiaren Zhang (433244)
Lisui Bao (476355)
Ludmilla Kaltenboeck (433245)
Rex Dunham (31998)
Geoff Waldbieser (644203)
Zhanjiang Liu (31986)

October 2014

<p>SNPs were separated into six categories according to their MAF level. The first two categories co...

MAF distribution of genomic and candidate SNPs (minor allele frequency >0.02) identified using sequence data and 250 K SNP arrays.

John Stanton-Geddes (163769)
Timothy Paape (207267)
Brendan Epstein (147035)
Roman Briskine (147045)
Jeremy Yoder (417308)
Joann Mudge (140254)
Arvind K. Bharti (147041)
Andrew D. Farmer (147049)
Peng Zhou (116747)
Roxanne Denny (417309)
Gregory D. May (145918)
Stephanie Erlandson (417310)
Mohammed Yakub (417311)
Masayuki Sugawara (147053)
Michael J. Sadowsky (147063)
Nevin D. Young (147058)
Peter Tiffin (104127)

May 2013

<p>Shown are (a) all assayed SNPs, (b) sequence-based candidates for height, (c) top 50 candidate SN...

Distribution of the 3,537,794 identified SNPs based on their genomic location.

Haluk Dogan (507791)
Handan Can (507792)
Hasan H. Otu (93582)

January 2014

<p>Distribution of the 3,537,794 identified SNPs based on their genomic location.</p

loadings_1000G.txt

Nicolas Duforet-Frebourg (3299862)
Guillaume Laval (250153)
Eric Bazin (5822)
Michael G.B. Blum (3200922)
Keurcien Luu (3200919)

November 2016

Loadings of SNPs from the 1000 genomes data (phase 1, 36,536,154 SNPs). Each loading corresponds to ...

Distribution of the number of SNPs detected in the DEGs.

Asep Gunawan (412995)
Sudeep Sahadevan (412996)
Mehmet Ulas Cinar (413003)
Christiane Neuhoff (412997)
Christine Große-Brinkhaus (412998)
Luc Frieden (413000)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Christian Looft (413001)
Dessie Salilew Wondim (450438)
Michael Hölker (79376)
Karl Schellander (79383)
Muhammad Jasim Uddin (413002)

August 2013

<p>The distribution of the number of SNPs occurred in each gene (A); numbers of SNPs in the genes se...

The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.

Hou-Feng Zheng (152901)
Jing-Jing Rong (686403)
Ming Liu (105953)
Fang Han (435237)
Xing-Wei Zhang (686404)
J. Brent Richards (144368)
Li Wang (15202)

January 2015

<p>The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.</p

Number of SNPs identified using a pool of equal numbers of quality filtered reads from each of eight varieties, totaling 96 million for ApeKI libraries, and 32 million for PstI libraries.

Stephen Byrne (384948)
Adrian Czaban (384949)
Bruno Studer (384950)
Frank Panitz (30316)
Christian Bendixen (7268)
Torben Asp (34644)

March 2013

<p>SNPs were identified using a Minor Allele Frequency (MAF) of 1 or 5 percent.</p

The observed single nucleotide polymorphisms (SNPs) and minor allele frequencies (MAF) in the genotyped cases and controls.

A. Inkeri Lokki (695426)
Tia Aalto-Viljakainen (695427)
Seppo Meri (53235)
Hannele Laivuori (178533)

February 2015

<p>The observed single nucleotide polymorphisms (SNPs) and minor allele frequencies (MAF) in the gen...

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF than HapMap CEU or CHD MAFs.

Lyle G. Best (215594)
Cindy M. Anderson (441658)
Richa Saxena (28290)
Berta Almoguera (455510)
Hareesh Chandrupatla (455511)
Candelaria Martin (441660)
Gilbert Falcon (441659)
Kylie Keplin (441662)
Nichole Pearson (441663)
Brendan J. Keating (113690)

September 2013

<p>The number of SNPs in each TMCC prevalence range with a statistically significant different PAF t...

Summary of the single nucleotide polymorphisms(SNPs) among the 3 candidate genes.

Shaofan Weng (170505)
Lihua Wang (14548)
Yi Rong (446776)
Yuewei Liu (170474)
Xin Wang (91924)
Hongyu Guan (351333)
Weihong Chen (170472)

October 2015

<p>MAF, minor allele frequency.</p><p>RS#, reference SNP identification number.</p><p>Summary of the...

Estimated proportion of heritability explained by SNPs for various diseases.

Chuong B. Do (22097)
David A. Hinds (128908)
Uta Francke (41540)
Nicholas Eriksson (54415)

October 2012

<p> indicates the number of SNP markers used in the model being evaluated. All other values indicate...

Daniela Iamartino (4494811)
Ezequiel L. Nicolazzi (4494805)
Curtis P. Van Tassell (175167)
James M. Reecy (121998)
Eric R. Fritz-Waters (749611)
James E. Koltes (693905)
Stefano Biffani (483609)
Tad S. Sonstegard (175161)
Steven G. Schroeder (275942)
Paolo Ajmone-Marsan (159432)
Riccardo Negrini (234230)
Rolando Pasquariello (4494820)
Paola Ramelli (4494814)
Angelo Coletta (4494802)
José F. Garcia (792870)
Ahmad Ali (4494817)
Luigi Ramunno (363121)
Gianfranco Cosenza (646439)
Denise A. A. de Oliveira (4494796)
Marcela G. Drummond (257408)
Eduardo Bastianetto (4494793)
Alessandro Davassi (4494799)
Ali Pirani (4494808)
Fiona Brew (3845815)
John L. Williams (177826)

October 2017

<p>Distribution of SNP Minor Allele Frequency (MAF) for Mediterranean, Murrah, Jaffarabadi and Nili-...

Allele Frequencies

Hecht, Benjamin Charles
Matala, Andrew P.
Hess, Jon E.
Narum, Shawn R.

November 2015

Allele Frequencies - The frequency of the major allele (P) is indicated for each of 19,703 SNP loci ...

Genotype and allele distribution of MTHFR SNPs in relation to sperm count.

Nishi Gupta (347826)
Saumya Sarkar (275922)
Archana David (347829)
Pravin Kumar Gangwar (434447)
Richa Gupta (365179)
Gita Khanna (434448)
Satya Narayan Sankhwar (434449)
Anil Khanna (347831)
Singh Rajender (275924)

July 2013

<p>Genotype and allele distribution of MTHFR SNPs in relation to sperm count.</p

Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.

Jan G. A. M. L. Uitdewilligen (411315)
Anne-Marie A. Wolters (411316)
Bjorn B. D’hoop (411317)
Theo J. A. Borm (411318)
Richard G. F. Visser (52153)
Herman J. van Eck (411319)

May 2013

<p>Distribution of minor allele frequencies (MAF) of all 129,156 genotyped sequence variants.</p

Distribution of SNP minor allele frequencies.

Luyang Sun (433243)
Shikai Liu (245897)
Ruijia Wang (644202)
Yanliang Jiang (245893)
Yu Zhang (12946)
Jiaren Zhang (433244)
Lisui Bao (476355)
Ludmilla Kaltenboeck (433245)
Rex Dunham (31998)
Geoff Waldbieser (644203)
Zhanjiang Liu (31986)

October 2014

<p>SNPs were separated into six categories according to their MAF level. The first two categories co...

MAF distribution of genomic and candidate SNPs (minor allele frequency >0.02) identified using sequence data and 250 K SNP arrays.

John Stanton-Geddes (163769)
Timothy Paape (207267)
Brendan Epstein (147035)
Roman Briskine (147045)
Jeremy Yoder (417308)
Joann Mudge (140254)
Arvind K. Bharti (147041)
Andrew D. Farmer (147049)
Peng Zhou (116747)
Roxanne Denny (417309)
Gregory D. May (145918)
Stephanie Erlandson (417310)
Mohammed Yakub (417311)
Masayuki Sugawara (147053)
Michael J. Sadowsky (147063)
Nevin D. Young (147058)
Peter Tiffin (104127)

May 2013

<p>Shown are (a) all assayed SNPs, (b) sequence-based candidates for height, (c) top 50 candidate SN...

Distribution of the 3,537,794 identified SNPs based on their genomic location.

Haluk Dogan (507791)
Handan Can (507792)
Hasan H. Otu (93582)

January 2014

<p>Distribution of the 3,537,794 identified SNPs based on their genomic location.</p

loadings_1000G.txt

Nicolas Duforet-Frebourg (3299862)
Guillaume Laval (250153)
Eric Bazin (5822)
Michael G.B. Blum (3200922)
Keurcien Luu (3200919)

November 2016

Loadings of SNPs from the 1000 genomes data (phase 1, 36,536,154 SNPs). Each loading corresponds to ...

Distribution of the number of SNPs detected in the DEGs.

Asep Gunawan (412995)
Sudeep Sahadevan (412996)
Mehmet Ulas Cinar (413003)
Christiane Neuhoff (412997)
Christine Große-Brinkhaus (412998)
Luc Frieden (413000)
Dawit Tesfaye (79384)
Ernst Tholen (79379)
Christian Looft (413001)
Dessie Salilew Wondim (450438)
Michael Hölker (79376)
Karl Schellander (79383)
Muhammad Jasim Uddin (413002)

August 2013

<p>The distribution of the number of SNPs occurred in each gene (A); numbers of SNPs in the genes se...

The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.

Hou-Feng Zheng (152901)
Jing-Jing Rong (686403)
Ming Liu (105953)
Fang Han (435237)
Xing-Wei Zhang (686404)
J. Brent Richards (144368)
Li Wang (15202)

January 2015

<p>The proportion of variants by Minor Allele Frequency (MAF) across imputation reference panels.</p

Number of SNPs identified using a pool of equal numbers of quality filtered reads from each of eight varieties, totaling 96 million for ApeKI libraries, and 32 million for PstI libraries.

Stephen Byrne (384948)
Adrian Czaban (384949)
Bruno Studer (384950)
Frank Panitz (30316)
Christian Bendixen (7268)
Torben Asp (34644)

March 2013

<p>SNPs were identified using a Minor Allele Frequency (MAF) of 1 or 5 percent.</p

The observed single nucleotide polymorphisms (SNPs) and minor allele frequencies (MAF) in the genotyped cases and controls.

A. Inkeri Lokki (695426)
Tia Aalto-Viljakainen (695427)
Seppo Meri (53235)
Hannele Laivuori (178533)

February 2015

<p>The observed single nucleotide polymorphisms (SNPs) and minor allele frequencies (MAF) in the gen...

The number of SNPs in each TMCC prevalence range with a statistically significant different PAF than HapMap CEU or CHD MAFs.

Lyle G. Best (215594)
Cindy M. Anderson (441658)
Richa Saxena (28290)
Berta Almoguera (455510)
Hareesh Chandrupatla (455511)
Candelaria Martin (441660)
Gilbert Falcon (441659)
Kylie Keplin (441662)
Nichole Pearson (441663)
Brendan J. Keating (113690)

September 2013

<p>The number of SNPs in each TMCC prevalence range with a statistically significant different PAF t...

Summary of the single nucleotide polymorphisms(SNPs) among the 3 candidate genes.

Shaofan Weng (170505)
Lihua Wang (14548)
Yi Rong (446776)
Yuewei Liu (170474)
Xin Wang (91924)
Hongyu Guan (351333)
Weihong Chen (170472)

October 2015

<p>MAF, minor allele frequency.</p><p>RS#, reference SNP identification number.</p><p>Summary of the...

Estimated proportion of heritability explained by SNPs for various diseases.

Chuong B. Do (22097)
David A. Hinds (128908)
Uta Francke (41540)
Nicholas Eriksson (54415)

October 2012

<p> indicates the number of SNP markers used in the model being evaluated. All other values indicate...

Daniela Iamartino (4494811)
Ezequiel L. Nicolazzi (4494805)
Curtis P. Van Tassell (175167)
James M. Reecy (121998)
Eric R. Fritz-Waters (749611)
James E. Koltes (693905)
Stefano Biffani (483609)
Tad S. Sonstegard (175161)
Steven G. Schroeder (275942)
Paolo Ajmone-Marsan (159432)
Riccardo Negrini (234230)
Rolando Pasquariello (4494820)
Paola Ramelli (4494814)
Angelo Coletta (4494802)
José F. Garcia (792870)
Ahmad Ali (4494817)
Luigi Ramunno (363121)
Gianfranco Cosenza (646439)
Denise A. A. de Oliveira (4494796)
Marcela G. Drummond (257408)
Eduardo Bastianetto (4494793)
Alessandro Davassi (4494799)
Ali Pirani (4494808)
Fiona Brew (3845815)
John L. Williams (177826)

October 2017

<p>Distribution of SNP Minor Allele Frequency (MAF) for Mediterranean, Murrah, Jaffarabadi and Nili-...

Allele Frequencies

Hecht, Benjamin Charles
Matala, Andrew P.
Hess, Jon E.
Narum, Shawn R.

November 2015

Allele Frequencies - The frequency of the major allele (P) is indicated for each of 19,703 SNP loci ...

Genotype and allele distribution of MTHFR SNPs in relation to sperm count.

Nishi Gupta (347826)
Saumya Sarkar (275922)
Archana David (347829)
Pravin Kumar Gangwar (434447)
Richa Gupta (365179)
Gita Khanna (434448)
Satya Narayan Sankhwar (434449)
Anil Khanna (347831)
Singh Rajender (275924)

July 2013

<p>Genotype and allele distribution of MTHFR SNPs in relation to sperm count.</p