Comparison of ST64B sequences for S. Typhimurium strains DT2 (Sanger) and DT104 (NCTC 13348) by MAUVE (See also Figure S3 for gene locations and levels of identity for various regions).

Andrew Taylor Bright (573290)
Micah J. Manary (280364)
Ryan Tewhey (226068)
Eliana M. Arango (573291)
Tina Wang (213038)
Nicholas J. Schork (176346)
Stephanie K. Yanow (573292)
Elizabeth A. Winzeler (84966)

June 2014

A set of 23,755 SNVs confidently genotyped (20 or more reads) in EAC02, EAC03 and Brazil I and wh...

Comparison of the sequences of fosB genes.

Zhuyingjie Fu (2657107)
Yang Liu (4829)
Chunhui Chen (119566)
Yan Guo (83742)
Ying Ma (123771)
Yang Yang (45629)
Fupin Hu (341240)
Xiaogang Xu (477826)
Minggui Wang (401070)

May 2016

Diversity of amino acids among fosB gene subtypes (A). Diversity of deduced amino acid seq...

Identified SNP, INDEL and VNTR differences between FSC198, FSC043 and SCHU S4 strains and their corresponding regions in three other genomes of F. tularensis.

Andreas Sjödin (3286)
Kerstin Svensson (263040)
Marie Lindgren (363304)
Mats Forsman (263045)
Pär Larsson (171191)

February 2013

aRegions S1–S8, Ft-M3, Ft-M8, Ft-M10 and RD18 have been published previously <a href="http://www....

Sequence comparisons of SXT elements in O139 strain MO10, the 5 Chinese outbreak strains and Alteromonas macleodii Aegaean Sea MED64.

Bo Pang (164741)
Pengcheng Du (216641)
Zhemin Zhou (157214)
Baowei Diao (207925)
Zhigang Cui (169126)
Haijian Zhou (207927)
Biao Kan (107255)

March 2016

Arrows with a black line represent the SXTs and CDSs, and the gray blocks represent the alignment...

Comparison of XbaI cleavage sites among six S. typhimurium strains.

Le Tang (618285)
Wei-Qiao Liu (77181)
Xin Fang (134979)
Qiang Sun (225630)
Song-Ling Zhu (618286)
Chun-Xiao Wang (618287)
Xiao-Yu Wang (384737)
Yong-Guo Li (266978)
Da-Ling Zhu (618288)
Kenneth E. Sanderson (618289)
Randal N. Johnston (266983)
Gui-Rong Liu (80139)
Shu-Lin Liu (80147)

August 2014

Notes:a, XbaI cleavage sites numbered according to their appearance order in LT2 st...

Comparison of Gifsy-1 sequences for S. Typhimurium strains LT2, DT104, SL1344, DT2 and Salmonella Serovar CVM23701 and Gifsy-3 sequence for S. Typhimurium ATCC 14028s by MAUVE (See also Text S5 for further explanation).

Lester Hiley (514373)
Ning-Xia Fang (514374)
Gino R. Micalizzi (514375)
John Bates (514376)

January 2014

Comparison of Gifsy-1 sequences for S. Typhimurium strains LT2, DT104, SL1344, DT2 and ...

Comparison of the SGI1 18 bp attP, attB, DR-Ls, DR-Rs of S. Typhimurium.

Benoît Doublet (234818)
George R. Golding (377769)
Michael R. Mulvey (288248)
Axel Cloeckaert (234814)

February 2013

(A) Alignment of the attP site of SGI1 and the primary attB site (1st <i...

Comparative genomic analysis between S. Typhimurium 4/74 and D23580.

Rocío Canals (595216)
Disa L. Hammarlöf (529156)
Carsten Kröger (497893)
Siân V. Owen (825674)
Wai Yee Fong (6208262)
Lizeth Lacharme-Lora (817511)
Xiaojun Zhu (352546)
Nicolas Wenner (124607)
Sarah E. Carden (6208265)
Jared Honeycutt (174904)
Denise M. Monack (243058)
Robert A. Kingsley (146912)
Philip Brownridge (1342554)
Roy R. Chaudhuri (6758)
Will P. M. Rowe (6208268)
Alexander V. Predeus (2329939)
Karsten Hokamp (42210)
Melita A. Gordon (146918)
Jay C. D. Hinton (95324)

January 2019

Plots were obtained using the Circa software (http://omgenomics.com/circa/). (A) 4/74 and D23580 chr...

Nucleotide sequence variations within the MSH2 gene sequence of 50 T. cruzi isolates from the United States compared to reference strains.

Dawn M. Roellig (283580)
Mason Y. Savage (283583)
A. Wendy Fujita (283585)
Christian Barnabé (283588)
Michel Tibayrenc (283592)
Frank J. Steurer (272680)
Michael J. Yabsley (206117)

February 2013

Genotype of each isolate precedes the isolate name. Nucleotide positions correspond to sites from...

An unrooted tree showing the inferred relationship between the nine S. Typhimurium clinical isolates.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The S. Typhimurium strain LT2 was used as the reference genome sequence for read mapping. More than ...

SNPs detected in the UK-1 strain with respected to the four S. Typhimurium genomes.

Yingqin Luo (57885)
Qingke Kong (154012)
Jiseon Yang (154018)
Arindam Mitra (154022)
Greg Golden (154026)
Soo-Young Wanda (154031)
Kenneth L. Roland (154037)
Roderick V. Jensen (154042)
Peter B. Ernst (154046)
Roy Curtiss III (154049)

July 2012

(A) Pair-wise comparison of the synonymous and nonsynonymous SNPs among the five sequenced S.<...

Single nucleotide polymorphisms unique to strains in the 2006/2008 clade.

Chisomo L. Msefula (146904)
Robert A. Kingsley (146912)
Melita A. Gordon (146918)
Elizabeth Molyneux (133440)
Malcolm E. Molyneux (52383)
Calman A. MacLennan (146929)
Gordon Dougan (30395)
Robert S. Heyderman (108590)

July 2012

Single nucleotide polymorphisms relative to S. Typhimurium strains LT2 and D23580, disting...

Partial quantitative data from the comparative genomic hybridization of the S. 4,[5],12:i:- isolates.

Noriko Ido (610279)
Ken-ichi Lee (610280)
Kaori Iwabuchi (610281)
Hidemasa Izumiya (280979)
Ikuo Uchida (470513)
Masahiro Kusumoto (378755)
Taketoshi Iwata (378752)
Makoto Ohnishi (82158)
Masato Akiba (357695)

August 2014

The ruler indicates the nucleotide number of S. Typhimurium LT2 chromosome (AE006468). The...

Distribution of DNA polymorphisms found in comparisons of BTx642/BTx623 and Tx7000/BTx623 in the ten sorghum chromosomes.

Joseph Evans (483639)
Ryan F. McCormick (483640)
Daryl Morishige (483641)
Sara N. Olson (483642)
Brock Weers (483643)
Josie Hilley (483644)
Patricia Klein (483645)
William Rooney (483646)
John Mullet (483647)

November 2013

The outside track is composed of two parts: gene density (outer black line) and locations of uniq...

Evolution of tRNA concentrations and assignment of preferred codons.

Stefan Klumpp (123336)
Jiajia Dong (123341)
Terence Hwa (34930)

November 2012

A: Correlation of tRNA gene copy numbers between E. coli MG1655 and S. typhimurium....

Pairwise comparison of EAC02 and EAC03.

Andrew Taylor Bright (573290)
Micah J. Manary (280364)
Ryan Tewhey (226068)
Eliana M. Arango (573291)
Tina Wang (213038)
Nicholas J. Schork (176346)
Stephanie K. Yanow (573292)
Elizabeth A. Winzeler (84966)

June 2014

A set of 23,755 SNVs confidently genotyped (20 or more reads) in EAC02, EAC03 and Brazil I and wh...

Comparison of the sequences of fosB genes.

Zhuyingjie Fu (2657107)
Yang Liu (4829)
Chunhui Chen (119566)
Yan Guo (83742)
Ying Ma (123771)
Yang Yang (45629)
Fupin Hu (341240)
Xiaogang Xu (477826)
Minggui Wang (401070)

May 2016

Diversity of amino acids among fosB gene subtypes (A). Diversity of deduced amino acid seq...

Identified SNP, INDEL and VNTR differences between FSC198, FSC043 and SCHU S4 strains and their corresponding regions in three other genomes of F. tularensis.

Andreas Sjödin (3286)
Kerstin Svensson (263040)
Marie Lindgren (363304)
Mats Forsman (263045)
Pär Larsson (171191)

February 2013

aRegions S1–S8, Ft-M3, Ft-M8, Ft-M10 and RD18 have been published previously <a href="http://www....

Sequence comparisons of SXT elements in O139 strain MO10, the 5 Chinese outbreak strains and Alteromonas macleodii Aegaean Sea MED64.

Bo Pang (164741)
Pengcheng Du (216641)
Zhemin Zhou (157214)
Baowei Diao (207925)
Zhigang Cui (169126)
Haijian Zhou (207927)
Biao Kan (107255)

March 2016

Arrows with a black line represent the SXTs and CDSs, and the gray blocks represent the alignment...

Comparison of XbaI cleavage sites among six S. typhimurium strains.

Le Tang (618285)
Wei-Qiao Liu (77181)
Xin Fang (134979)
Qiang Sun (225630)
Song-Ling Zhu (618286)
Chun-Xiao Wang (618287)
Xiao-Yu Wang (384737)
Yong-Guo Li (266978)
Da-Ling Zhu (618288)
Kenneth E. Sanderson (618289)
Randal N. Johnston (266983)
Gui-Rong Liu (80139)
Shu-Lin Liu (80147)

August 2014

Notes:a, XbaI cleavage sites numbered according to their appearance order in LT2 st...

Comparison of Gifsy-1 sequences for S. Typhimurium strains LT2, DT104, SL1344, DT2 and Salmonella Serovar CVM23701 and Gifsy-3 sequence for S. Typhimurium ATCC 14028s by MAUVE (See also Text S5 for further explanation).

Lester Hiley (514373)
Ning-Xia Fang (514374)
Gino R. Micalizzi (514375)
John Bates (514376)

January 2014

Comparison of Gifsy-1 sequences for S. Typhimurium strains LT2, DT104, SL1344, DT2 and ...

Comparison of the SGI1 18 bp attP, attB, DR-Ls, DR-Rs of S. Typhimurium.

Benoît Doublet (234818)
George R. Golding (377769)
Michael R. Mulvey (288248)
Axel Cloeckaert (234814)

February 2013

(A) Alignment of the attP site of SGI1 and the primary attB site (1st <i...

Comparative genomic analysis between S. Typhimurium 4/74 and D23580.

Rocío Canals (595216)
Disa L. Hammarlöf (529156)
Carsten Kröger (497893)
Siân V. Owen (825674)
Wai Yee Fong (6208262)
Lizeth Lacharme-Lora (817511)
Xiaojun Zhu (352546)
Nicolas Wenner (124607)
Sarah E. Carden (6208265)
Jared Honeycutt (174904)
Denise M. Monack (243058)
Robert A. Kingsley (146912)
Philip Brownridge (1342554)
Roy R. Chaudhuri (6758)
Will P. M. Rowe (6208268)
Alexander V. Predeus (2329939)
Karsten Hokamp (42210)
Melita A. Gordon (146918)
Jay C. D. Hinton (95324)

January 2019

Plots were obtained using the Circa software (http://omgenomics.com/circa/). (A) 4/74 and D23580 chr...

Nucleotide sequence variations within the MSH2 gene sequence of 50 T. cruzi isolates from the United States compared to reference strains.

Dawn M. Roellig (283580)
Mason Y. Savage (283583)
A. Wendy Fujita (283585)
Christian Barnabé (283588)
Michel Tibayrenc (283592)
Frank J. Steurer (272680)
Michael J. Yabsley (206117)

February 2013

Genotype of each isolate precedes the isolate name. Nucleotide positions correspond to sites from...

An unrooted tree showing the inferred relationship between the nine S. Typhimurium clinical isolates.

M. John Albert (822704)
Dieter Bulach (368712)
Wadha Alfouzan (4428505)
Hidemasa Izumiya (280979)
Glen Carter (4996556)
Khaled Alobaid (6589232)
Fatemah Alatar (6589235)
Abdul Rashid Sheikh (6589238)
Laurent Poirel (13456)

April 2019

The S. Typhimurium strain LT2 was used as the reference genome sequence for read mapping. More than ...

SNPs detected in the UK-1 strain with respected to the four S. Typhimurium genomes.

Yingqin Luo (57885)
Qingke Kong (154012)
Jiseon Yang (154018)
Arindam Mitra (154022)
Greg Golden (154026)
Soo-Young Wanda (154031)
Kenneth L. Roland (154037)
Roderick V. Jensen (154042)
Peter B. Ernst (154046)
Roy Curtiss III (154049)

July 2012

(A) Pair-wise comparison of the synonymous and nonsynonymous SNPs among the five sequenced S.<...

Single nucleotide polymorphisms unique to strains in the 2006/2008 clade.

Chisomo L. Msefula (146904)
Robert A. Kingsley (146912)
Melita A. Gordon (146918)
Elizabeth Molyneux (133440)
Malcolm E. Molyneux (52383)
Calman A. MacLennan (146929)
Gordon Dougan (30395)
Robert S. Heyderman (108590)

July 2012

Single nucleotide polymorphisms relative to S. Typhimurium strains LT2 and D23580, disting...

Partial quantitative data from the comparative genomic hybridization of the S. 4,[5],12:i:- isolates.

Noriko Ido (610279)
Ken-ichi Lee (610280)
Kaori Iwabuchi (610281)
Hidemasa Izumiya (280979)
Ikuo Uchida (470513)
Masahiro Kusumoto (378755)
Taketoshi Iwata (378752)
Makoto Ohnishi (82158)
Masato Akiba (357695)

August 2014

The ruler indicates the nucleotide number of S. Typhimurium LT2 chromosome (AE006468). The...

Distribution of DNA polymorphisms found in comparisons of BTx642/BTx623 and Tx7000/BTx623 in the ten sorghum chromosomes.

Joseph Evans (483639)
Ryan F. McCormick (483640)
Daryl Morishige (483641)
Sara N. Olson (483642)
Brock Weers (483643)
Josie Hilley (483644)
Patricia Klein (483645)
William Rooney (483646)
John Mullet (483647)

November 2013

The outside track is composed of two parts: gene density (outer black line) and locations of uniq...

Evolution of tRNA concentrations and assignment of preferred codons.

Stefan Klumpp (123336)
Jiajia Dong (123341)
Terence Hwa (34930)

November 2012

A: Correlation of tRNA gene copy numbers between E. coli MG1655 and S. typhimurium....

Pairwise comparison of EAC02 and EAC03.

Andrew Taylor Bright (573290)
Micah J. Manary (280364)
Ryan Tewhey (226068)
Eliana M. Arango (573291)
Tina Wang (213038)
Nicholas J. Schork (176346)
Stephanie K. Yanow (573292)
Elizabeth A. Winzeler (84966)

June 2014

A set of 23,755 SNVs confidently genotyped (20 or more reads) in EAC02, EAC03 and Brazil I and wh...

Comparison of the sequences of fosB genes.

Zhuyingjie Fu (2657107)
Yang Liu (4829)
Chunhui Chen (119566)
Yan Guo (83742)
Ying Ma (123771)
Yang Yang (45629)
Fupin Hu (341240)
Xiaogang Xu (477826)
Minggui Wang (401070)

May 2016

Diversity of amino acids among fosB gene subtypes (A). Diversity of deduced amino acid seq...

Identified SNP, INDEL and VNTR differences between FSC198, FSC043 and SCHU S4 strains and their corresponding regions in three other genomes of F. tularensis.

Andreas Sjödin (3286)
Kerstin Svensson (263040)
Marie Lindgren (363304)
Mats Forsman (263045)
Pär Larsson (171191)

February 2013

aRegions S1–S8, Ft-M3, Ft-M8, Ft-M10 and RD18 have been published previously <a href="http://www....

Comparison of ST64B sequences for <i>S.</i> Typhimurium strains DT2 (Sanger) and DT104 (NCTC 13348) by MAUVE (See also Figure S3 for gene locations and levels of identity for various regions).

Abstract

Extracted data

Comparison of ST64B sequences for <i>S.</i> Typhimurium strains DT2 (Sanger) and DT104 (NCTC 13348) by MAUVE (See also Figure S3 for gene locations and levels of identity for various regions).

Abstract

Extracted data

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