<p>Fkh1 and Fkh2 enrichment frequencies surrounding different classes of genetic elements are oriented and aligned at coordinate 0 according to the first base position of each element. The maximum frequency reached within 100(500 bp for Y′) of coordinate 0 is indicated above each heat map. The asterisk indicates significant enrichment (p<0.001) near coordinate 0 (see <b>Methods</b>).</p
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...
<p>Gene-annotation enrichment analysis heat map and clustering for sensitive strains to different co...
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...
<p>(<b>A–B</b>) Heat maps show 10 kb regions of summed binding data for the indicated types of bindi...
<p>Heat maps show 10 kb regions of summed binding data for the indicated types of binding loci (Fkh1...
<p><b>A</b>) The k-means cluster-gram on the left shows the average signal intensity of individual b...
<p>Sequence logos of HTH DNA-binding domains and corresponding binding sites are shown on the top an...
<p><b>A–D</b>) Venn diagrams show overlap between binding regions identified and/or categorized in d...
<p>Microarray results sorted for the top 30 genes down/up regulated compared to the parental strain ...
<p>(a) Common and unique mutations in the FL library and FR library. (b) Heatmap of the positions of...
<p>Notation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0132618#pone...
In this technical note, we describe analyses of more than 15,000 sequences of FK506-binding proteins...
<p>Notation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0132618#pone...
<p>Percentage of FXR binding sites in the two datasets that were distributed to >10 kb from genes (i...
Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with differe...
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...
<p>Gene-annotation enrichment analysis heat map and clustering for sensitive strains to different co...
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...
<p>(<b>A–B</b>) Heat maps show 10 kb regions of summed binding data for the indicated types of bindi...
<p>Heat maps show 10 kb regions of summed binding data for the indicated types of binding loci (Fkh1...
<p><b>A</b>) The k-means cluster-gram on the left shows the average signal intensity of individual b...
<p>Sequence logos of HTH DNA-binding domains and corresponding binding sites are shown on the top an...
<p><b>A–D</b>) Venn diagrams show overlap between binding regions identified and/or categorized in d...
<p>Microarray results sorted for the top 30 genes down/up regulated compared to the parental strain ...
<p>(a) Common and unique mutations in the FL library and FR library. (b) Heatmap of the positions of...
<p>Notation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0132618#pone...
In this technical note, we describe analyses of more than 15,000 sequences of FK506-binding proteins...
<p>Notation as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0132618#pone...
<p>Percentage of FXR binding sites in the two datasets that were distributed to >10 kb from genes (i...
Comparing the TF enrichment analysis of genes regulated by the first layer hidden nodes with differe...
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...
<p>Gene-annotation enrichment analysis heat map and clustering for sensitive strains to different co...
<p>The pie charts on the right of each heat map represent the frequencies of feeding treatment (top)...