Imputed Genotype Scores 438K Single Nucleotide Polymorphisms across 503 diverse maize inbred lines

The genotypes from 55,266 SNP scored in 1,210 cattle

Jelena Ramljak (5029808)
Gjoko Bunevski (5029802)
Hysen Bytyqi (5029817)
Božidarka Marković (5029823)
Muhamed Brka (5029811)
Ante Ivanković (5029826)
Kristaq Kume (5029829)
Srđan Stojanović (5029796)
Vasil Nikolov (5029793)
Mojca Simčič (731701)
Johann Soelkner (5029805)
Elisabeth Kunz (3588101)
Sophie Rothammer (157532)
Doris Seichter (157510)
Hans-Peter Grünenfelder (5029820)
Elli Broxham (5029814)
Waltraud Kugler (5029799)
Ivica Medugorac (157507)

March 2018

This file contains the genotypes from 55,266 SNP markers scored in 1,210 cattle. Samples were genoty...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using FILLIN

Hearne, Sarah
Buckler, Ed
Chen, Charles
Mitchell, Sharon
Swarts, Kelly
Li, Huihui
Romero, Alberto

January 2014

Obtain imputed SNP profiles from genotyping-by-sequencing of the accession parents of the SeeD GWAS ...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using Beagle v.4

Hearne, Sarah
Chen, Charles
Buckler, Ed
Mitchell, Sharon
Romero, Alberto
Swarts, Kelly
Li, Huihui

January 2014

Obtain imputed SNP profiles using Beagle v.4 from genotyping-by-sequencing of the accession parents ...

Imputed Genotype Scores 438K Single Nucleotide Polymorphisms across 503 diverse maize inbred lines

Hirsch, Candice N.
Foerster, Jillian M.
Johnson, James M.
Sekhon, Rajandeep S.
Muttoni, German
Vaillancourt, Brieanne
Peñagaricano, Francisco
Lindquist, Erika
Pedraza, Mary Ann
Barry, Kerrie
de Leon, Natalia
Kaeppler, Shawn M.
Buell, C. Robin

February 2014

The file is a CSV file with a header that contains genotype scores imputed using GAPIT

Single Nucleotide Polymorphisms (SNPs) for 503 diverse maize inbred lines.

Candice N. Hirsch (405862)
Jillian M. Foerster (3255705)
James M. Johnson (1308210)
Rajandeep S. Sekhon (132000)
German Muttoni (3255708)
Brieanne Vaillancourt (108028)
Francisco Peñagaricano (435548)
Erika Lindquist (116964)
Mary Ann Pedraza (3255711)
Kerrie Barry (276529)
Natalia de Leon (177748)
Shawn M. Kaeppler (177752)
C. Robin Buell (108039)

March 2017

This is a tab delimited file with a header line that contains raw SNP data for 485,179 SNPs across 5...

genepop_11321SNP_6clusters_IMPUTED

Bernatchez, Simon
Xuereb, Amanda
Laporte, Martin
Benestan, Laura
Steeves, Royce
Laflamme, Mark
Bernatchez, Louis
Mallet, Martin

November 2018

Imputed genotypes data for putatively all filtered SNPs with individuals in 6 clutersin Genepop form...

Genotypic data used for GAPIT analysis

Kim, Suk-Man
Reinke, Russell

February 2019

This file contains the genotypic data used for the GAPIT genome wide association analysis

genepop_11321SNP_6clusters_IMPUTED_33indv

Simon Bernatchez (3201780)
Amanda Xuereb (5027375)
Martin Laporte (3200634)
Laura Benestan (2929767)
Royce Steeves (5996948)
Mark Laflamme (3240846)
Louis Bernatchez (33427)
Martin Mallet (5996951)

November 2018

Imputed genotypes data for putatively all filtered SNPs with individuals in 6 cluters (equal sample ...

Genotypes of neutral loci in genepop format

Chen, Zhongqi
Farrell, Anthony
Matala, Amanda
Hoffman, Nicholas
Narum, Shawn

June 2018

This file contains genotypes of 525,866 putative neutral loci for a total of 115 fish from six redba...

Genotype_data

Teotonio, Henrique
Chelo, Ivo

September 2013

This file contains a table with genotypes of the individuals from populations (inbred and outbred) o...

The genetic architecture of teosinte catalyzed and constrained maize domestication

Chin Jian Yang (6280970)
Luis Fernando Samayoa (1420132)
Peter J. Bradbury (195683)
Bode A. Olukolu (623026)
Wei Xue (6281015)
Alessandra M. York (6281027)
Michael R. Tuholski (6281028)
Weidong Wang (6281002)
Lora L. Daskalska (6281030)
Michael A. Neumeyer (6281033)
José de Jesús Sánchez González (4860400)
M. Cinta Romay (6281044)
Jeffrey C. Glaubitz (222156)
Qi Sun (6281045)
Edward S. Buckler (14329)
James B. Holland (195686)
John F. Doebley (256204)

February 2019

This fileset contains two genotype files used in the following manuscript:Yang CJ, et al. (2019) The...

Diversity indices statistics of the 94 maize inbred lines based on 15,047 SNP markers.

Gloria Boakyewaa Adu (6569723)
Baffour Badu-Apraku (6569726)
Richard Akromah (6569729)
Ana Luisa Garcia-Oliveira (6569732)
Frederick Justice Awuku (6569735)
Melaku Gedil (3486449)

April 2019

Diversity indices statistics of the 94 maize inbred lines based on 15,047 SNP markers.</p

Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle.

Druet, Tom
Schrooten, C.
de Roos, A. P. W.

January 2010

Imputation of missing genotypes is important to join data from animals genotyped on different single...

Genotypes of outlier loci in genepop format

Chen, Zhongqi
Farrell, Anthony
Matala, Amanda
Hoffman, Nicholas
Narum, Shawn

June 2018

This file contains genotypes of 435 putative adaptive loci for a total of 115 fish from six redband ...

genepop_file_4357_SNPs

Faust, Ellika
Halvorsen, Kim T
Andersen, Per
Knutsen, Halvor
Carl, André

February 2018

Text file (genepop input format) containing the genotypes used for population genomics analysis. The...

The genotypes from 55,266 SNP scored in 1,210 cattle

Jelena Ramljak (5029808)
Gjoko Bunevski (5029802)
Hysen Bytyqi (5029817)
Božidarka Marković (5029823)
Muhamed Brka (5029811)
Ante Ivanković (5029826)
Kristaq Kume (5029829)
Srđan Stojanović (5029796)
Vasil Nikolov (5029793)
Mojca Simčič (731701)
Johann Soelkner (5029805)
Elisabeth Kunz (3588101)
Sophie Rothammer (157532)
Doris Seichter (157510)
Hans-Peter Grünenfelder (5029820)
Elli Broxham (5029814)
Waltraud Kugler (5029799)
Ivica Medugorac (157507)

March 2018

This file contains the genotypes from 55,266 SNP markers scored in 1,210 cattle. Samples were genoty...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using FILLIN

Hearne, Sarah
Buckler, Ed
Chen, Charles
Mitchell, Sharon
Swarts, Kelly
Li, Huihui
Romero, Alberto

January 2014

Obtain imputed SNP profiles from genotyping-by-sequencing of the accession parents of the SeeD GWAS ...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using Beagle v.4

Hearne, Sarah
Chen, Charles
Buckler, Ed
Mitchell, Sharon
Romero, Alberto
Swarts, Kelly
Li, Huihui

January 2014

Obtain imputed SNP profiles using Beagle v.4 from genotyping-by-sequencing of the accession parents ...

Imputed Genotype Scores 438K Single Nucleotide Polymorphisms across 503 diverse maize inbred lines

Hirsch, Candice N.
Foerster, Jillian M.
Johnson, James M.
Sekhon, Rajandeep S.
Muttoni, German
Vaillancourt, Brieanne
Peñagaricano, Francisco
Lindquist, Erika
Pedraza, Mary Ann
Barry, Kerrie
de Leon, Natalia
Kaeppler, Shawn M.
Buell, C. Robin

February 2014

The file is a CSV file with a header that contains genotype scores imputed using GAPIT

Single Nucleotide Polymorphisms (SNPs) for 503 diverse maize inbred lines.

Candice N. Hirsch (405862)
Jillian M. Foerster (3255705)
James M. Johnson (1308210)
Rajandeep S. Sekhon (132000)
German Muttoni (3255708)
Brieanne Vaillancourt (108028)
Francisco Peñagaricano (435548)
Erika Lindquist (116964)
Mary Ann Pedraza (3255711)
Kerrie Barry (276529)
Natalia de Leon (177748)
Shawn M. Kaeppler (177752)
C. Robin Buell (108039)

March 2017

This is a tab delimited file with a header line that contains raw SNP data for 485,179 SNPs across 5...

genepop_11321SNP_6clusters_IMPUTED

Bernatchez, Simon
Xuereb, Amanda
Laporte, Martin
Benestan, Laura
Steeves, Royce
Laflamme, Mark
Bernatchez, Louis
Mallet, Martin

November 2018

Imputed genotypes data for putatively all filtered SNPs with individuals in 6 clutersin Genepop form...

Genotypic data used for GAPIT analysis

Kim, Suk-Man
Reinke, Russell

February 2019

This file contains the genotypic data used for the GAPIT genome wide association analysis

genepop_11321SNP_6clusters_IMPUTED_33indv

Simon Bernatchez (3201780)
Amanda Xuereb (5027375)
Martin Laporte (3200634)
Laura Benestan (2929767)
Royce Steeves (5996948)
Mark Laflamme (3240846)
Louis Bernatchez (33427)
Martin Mallet (5996951)

November 2018

Imputed genotypes data for putatively all filtered SNPs with individuals in 6 cluters (equal sample ...

Genotypes of neutral loci in genepop format

Chen, Zhongqi
Farrell, Anthony
Matala, Amanda
Hoffman, Nicholas
Narum, Shawn

June 2018

This file contains genotypes of 525,866 putative neutral loci for a total of 115 fish from six redba...

Genotype_data

Teotonio, Henrique
Chelo, Ivo

September 2013

This file contains a table with genotypes of the individuals from populations (inbred and outbred) o...

The genetic architecture of teosinte catalyzed and constrained maize domestication

Chin Jian Yang (6280970)
Luis Fernando Samayoa (1420132)
Peter J. Bradbury (195683)
Bode A. Olukolu (623026)
Wei Xue (6281015)
Alessandra M. York (6281027)
Michael R. Tuholski (6281028)
Weidong Wang (6281002)
Lora L. Daskalska (6281030)
Michael A. Neumeyer (6281033)
José de Jesús Sánchez González (4860400)
M. Cinta Romay (6281044)
Jeffrey C. Glaubitz (222156)
Qi Sun (6281045)
Edward S. Buckler (14329)
James B. Holland (195686)
John F. Doebley (256204)

February 2019

This fileset contains two genotype files used in the following manuscript:Yang CJ, et al. (2019) The...

Diversity indices statistics of the 94 maize inbred lines based on 15,047 SNP markers.

Gloria Boakyewaa Adu (6569723)
Baffour Badu-Apraku (6569726)
Richard Akromah (6569729)
Ana Luisa Garcia-Oliveira (6569732)
Frederick Justice Awuku (6569735)
Melaku Gedil (3486449)

April 2019

Diversity indices statistics of the 94 maize inbred lines based on 15,047 SNP markers.</p

Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle.

Druet, Tom
Schrooten, C.
de Roos, A. P. W.

January 2010

Imputation of missing genotypes is important to join data from animals genotyped on different single...

Genotypes of outlier loci in genepop format

Chen, Zhongqi
Farrell, Anthony
Matala, Amanda
Hoffman, Nicholas
Narum, Shawn

June 2018

This file contains genotypes of 435 putative adaptive loci for a total of 115 fish from six redband ...

genepop_file_4357_SNPs

Faust, Ellika
Halvorsen, Kim T
Andersen, Per
Knutsen, Halvor
Carl, André

February 2018

Text file (genepop input format) containing the genotypes used for population genomics analysis. The...

The genotypes from 55,266 SNP scored in 1,210 cattle

Jelena Ramljak (5029808)
Gjoko Bunevski (5029802)
Hysen Bytyqi (5029817)
Božidarka Marković (5029823)
Muhamed Brka (5029811)
Ante Ivanković (5029826)
Kristaq Kume (5029829)
Srđan Stojanović (5029796)
Vasil Nikolov (5029793)
Mojca Simčič (731701)
Johann Soelkner (5029805)
Elisabeth Kunz (3588101)
Sophie Rothammer (157532)
Doris Seichter (157510)
Hans-Peter Grünenfelder (5029820)
Elli Broxham (5029814)
Waltraud Kugler (5029799)
Ivica Medugorac (157507)

March 2018

This file contains the genotypes from 55,266 SNP markers scored in 1,210 cattle. Samples were genoty...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using FILLIN

Hearne, Sarah
Buckler, Ed
Chen, Charles
Mitchell, Sharon
Swarts, Kelly
Li, Huihui
Romero, Alberto

January 2014

Obtain imputed SNP profiles from genotyping-by-sequencing of the accession parents of the SeeD GWAS ...

Imputed GbS derived SNPs for maize landrace accessions represented in the SeeD-maize GWAS panel: Imputation using Beagle v.4

Hearne, Sarah
Chen, Charles
Buckler, Ed
Mitchell, Sharon
Romero, Alberto
Swarts, Kelly
Li, Huihui

January 2014

Obtain imputed SNP profiles using Beagle v.4 from genotyping-by-sequencing of the accession parents ...

Imputed Genotype Scores 438K Single Nucleotide Polymorphisms across 503 diverse maize inbred lines

Abstract

Extracted data

Imputed Genotype Scores 438K Single Nucleotide Polymorphisms across 503 diverse maize inbred lines

Abstract

Extracted data

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