Genome atlas.

<p>Right semicircle: The green band in the outermost part of the semicircle illustrates the reference chromosome (AM990992) with the size of 2,872,582 bp. The three circular plasmids harboured by the reference are not included. The black spikes connected to the green semicircle shows the distribution of the reads from the raw transposon mutant library aligned to the reference strain. The black and red dots indicate positions within the reference with large number of reads (insertion index >0.02) and low number of reads (insertion index <0.02) respectively. Left semicircle: The red colours show of zoom of the seven MLST genes (<i>arcC</i> represented twice due to two copies of this particular gene) and the black spikes illustrated in some of the genes show reads mapping within the open reading frame. The arrows indicate transcription direction. The zoom of SAPIG2704 and SAPIG2129, visualised in blue colours, show examples of two genes with a large number of read mapping throughout the open reading frames.