a<p>In each individual tissue, some probesets met selection criteria for down-regulation at one time point and up-regulation at another. Row totals count each probeset once using the following formula: (Down) + (Up) – (Down & Up).</p
<p>Expression levels were normalized to the time 0 h control condition to emphasize change over time...
<p>Of all spots included in the analyses (see <a href="http://www.plosone.org/article/info:doi/10.13...
<p><u>Panel A:</u> Plot of gene expression averaged from 3 biological replicates for those DEGs foun...
<p>Number of differentially expressed probesets in treatment groups compared to control (growth medi...
<p>Group 1: Control hMSC, Group 2: Day-4 GDF5-induced hMSC, Group 3: Day-10 GDF5-induced hMSC, Group...
<p>(<b>A</b>) Pairwise analysis. For each paired tissue, the SAM-FDR method is applied and leads to ...
<p>Probesets (≤5% FDR; ≥1.5-fold-change compared to control; and ≥50% present call within at least o...
(A) Number of differentially expressed genes that vary over time in the standard and modified tissue...
<p>The numbers on the horizontal axis represented for the time after heat treatment, and that on the...
<p>A. Inclusion criteria used to define probe sets as primarily or exclusively associated with long-...
<p>The numbers at the horizontal arrows indicate the quantity of probe-sets significantly regulated ...
<p>Number of significantly differentially expressed probes between experimental conditions.</p
<p>Each row represents a gene, and columns represent consecutive sampling times (1 day, 3 days, 7 da...
<p>The left group represents hits from the initial screening with uncorrected p-value of ≤0.01 vs. u...
∧∧<p>probesets expressed with sex bias in one or more tissues may be expressed without bias in other...
<p>Expression levels were normalized to the time 0 h control condition to emphasize change over time...
<p>Of all spots included in the analyses (see <a href="http://www.plosone.org/article/info:doi/10.13...
<p><u>Panel A:</u> Plot of gene expression averaged from 3 biological replicates for those DEGs foun...
<p>Number of differentially expressed probesets in treatment groups compared to control (growth medi...
<p>Group 1: Control hMSC, Group 2: Day-4 GDF5-induced hMSC, Group 3: Day-10 GDF5-induced hMSC, Group...
<p>(<b>A</b>) Pairwise analysis. For each paired tissue, the SAM-FDR method is applied and leads to ...
<p>Probesets (≤5% FDR; ≥1.5-fold-change compared to control; and ≥50% present call within at least o...
(A) Number of differentially expressed genes that vary over time in the standard and modified tissue...
<p>The numbers on the horizontal axis represented for the time after heat treatment, and that on the...
<p>A. Inclusion criteria used to define probe sets as primarily or exclusively associated with long-...
<p>The numbers at the horizontal arrows indicate the quantity of probe-sets significantly regulated ...
<p>Number of significantly differentially expressed probes between experimental conditions.</p
<p>Each row represents a gene, and columns represent consecutive sampling times (1 day, 3 days, 7 da...
<p>The left group represents hits from the initial screening with uncorrected p-value of ≤0.01 vs. u...
∧∧<p>probesets expressed with sex bias in one or more tissues may be expressed without bias in other...
<p>Expression levels were normalized to the time 0 h control condition to emphasize change over time...
<p>Of all spots included in the analyses (see <a href="http://www.plosone.org/article/info:doi/10.13...
<p><u>Panel A:</u> Plot of gene expression averaged from 3 biological replicates for those DEGs foun...