Comparison of SNP detection methods from 454 data, and identification of bona fide SNPs for functional analysis.

<p>The number of SNPs (n) which were detected individually by Refmapper and GATK are shown. The SNPs that were called by both algorithms (and passed filtering) are given in the intersection, and the union represents SNPs that were called by at least one package. SNPs detected in the 5.3 kb region sequenced via Sanger sequencing are also listed.