Enrichment of histone variants around the TSS with promoters of high and low CpG density.

Distribution of histone modification marks in the GM12878 cell line across lncRNA and protein-coding gene promoters.

Tanvir Alam (638619)
Yulia A. Medvedeva (472065)
Hui Jia (638620)
James B. Brown (638621)
Leonard Lipovich (16637)
Vladimir B. Bajic (8687)

October 2014

Figure demonstrates fraction of all promoters covered by chromatin a particular mark. Blue line c...

Open chromatin and transcription factor occupancy in functional CpG sites.

Uppala Radhakrishna (804909)
Sangeetha Vishweswaraiah (429990)
Avinash M. Veerappa (429989)
Rita Zafra (5746679)
Samet Albayrak (2734897)
Prajna H. Sitharam (5746682)
Nazia M. Saiyed (5746685)
Nitish K. Mishra (589321)
Chittibabu Guda (13806)
Ray Bahado-Singh (5746688)

September 2018

Pie charts depicting H3K27Ac histone mark layering, location of CpG sites and transcription factor b...

Enrichment of histone variants in enhancer regions.

Masashi Yukawa (10097)
Tomohiko Akiyama (202078)
Vedran Franke (523109)
Nathan Mise (265452)
Takayuki Isagawa (201875)
Yutaka Suzuki (1379)
Masataka G. Suzuki (12939)
Kristian Vlahovicek (5658394)
Kuniya Abe (64132)
Hiroyuki Aburatani (162634)
Fugaku Aoki (202084)

March 2014

Bars represent the ratios (%) of enrichment of the histone H2A (A) and H3 (B) variants ±200 bp fr...

Methylation and density patterns of CpGs and CpHs at the locations of HCP and LCP genes.

Xiaolong Yuan (4987508)
Zhonghui Li (2677027)
Shaopan Ye (4987505)
Zitao Chen (6433136)
Shuwen Huang (5347541)
Yuyi Zhong (6433139)
Hao Zhang (15339)
Jiaqi Li (220961)
Zhe Zhang (81603)

March 2019

Methylation and density patterns of CpGs at the locations of HCP (a) and LCP (b) genes. Methylation ...

Genomic distribution and association with histone modifications of MLV and SIN-MLV integrations in human HSPCs.

Arianna Moiani (278745)
Annarita Miccio (194371)
Ermanno Rizzi (31120)
Marco Severgnini (165168)
Danilo Pellin (109905)
Julia Debora Suerth (278746)
Christopher Baum (278747)
Gianluca De Bellis (31121)
Fulvio Mavilio (194321)

January 2013

Distribution of the distance of SIN-MLV (green bars) and MLV (red bars) integration sites from th...

Schematic view of histone variant enrichment in various genome regions.

Masashi Yukawa (10097)
Tomohiko Akiyama (202078)
Vedran Franke (523109)
Nathan Mise (265452)
Takayuki Isagawa (201875)
Yutaka Suzuki (1379)
Masataka G. Suzuki (12939)
Kristian Vlahovicek (5658394)
Kuniya Abe (64132)
Hiroyuki Aburatani (162634)
Fugaku Aoki (202084)

March 2014

Relative enrichment of each histone variant in various genome regions is indicated by the ellipse...

H1 is depleted at GC-rich, gene-rich regions and TSSs of active promoters.

Kaixiang Cao (158822)
Nathalie Lailler (224524)
Yunzhe Zhang (158809)
Ashwath Kumar (407053)
Karan Uppal (407054)
Zheng Liu (28397)
Eva K. Lee (407055)
Hongwei Wu (9168)
Magdalena Medrzycki (158818)
Chenyi Pan (165378)
Po-Yi Ho (165372)
Guy P. Cooper Jr (407056)
Xiao Dong (244652)
Christoph Bock (29200)
Eric E. Bouhassira (201362)
Yuhong Fan (158826)

April 2013

(A) Examples of distributions of H1 variants and histone marks at an 8 Mb- (i) and a 200 kb- (ii)...

Relation between histone modification level (summed peak heights per gene) and expression level.

Yvonne G. van der Zwan (150392)
Martin A. Rijlaarsdam (571370)
Fernando J. Rossello (463396)
Amanda J. Notini (571371)
Suzan de Boer (150413)
D. Neil Watkins (61722)
Ad J. M. Gillis (401562)
Lambert C. J. Dorssers (505758)
Stefan J. White (168397)
Leendert H. J. Looijenga (140243)

June 2014

Top and bottom right images depict the percentage of highly (>p50) expressed genes calculated ...

Gene up-regulation induced by combinatorial treatment is due to histone modifications in T24 cells.

Han Han (174736)
Xiaojing Yang (154840)
Kurinji Pandiyan (407298)
Gangning Liang (174746)

September 2013

A. Density plots for each treatment across all 450,000 CpG sites. The x-axis represents beta valu...

Genomic properties of HCNEs.

Loqmane Seridi (640918)
Taewoo Ryu (75481)
Timothy Ravasi (155072)

October 2014

(A) Violin plot illustrating that HCNEs have a higher GC content versus 10,000 random non-coding ...

Proc Natl Acad Sci USA

Karlic, R.
Chung, H.
Lasserre, J.
Vlahovicek, K.
Vingron, M.

February 2010

Histones are frequently decorated with covalent modifications. These histone modifications are thoug...

Histone H1.5 is differentially distributed in fibroblasts and embryonic stem cells.

Jing-Yu Li (139513)
Michaela Patterson (78872)
Hanna K. A. Mikkola (102967)
William E. Lowry (116165)
Siavash K. Kurdistani (139520)

August 2012

(A) Venn diagram of significant peaks of H1.5 binding in H1 hESCs and IMR90 fibroblasts by ChIP-s...

Gene positioning and biological significance of the transcription-linked histone marks.

Archna P. Gupta (180945)
Wai Hoe Chin (383889)
Lei Zhu (16642)
Sachel Mok (258479)
Yen-Hoon Luah (254333)
Eng-How Lim (383890)
Zbynek Bozdech (1561)

March 2013

The plots on the left represent the frequency (percentage) of transcription-linked histone marks ...

Cluster analysis of differential histone modification levels at transcriptional start sites reveals groups of co-regulated genes associated with immune-relevant functions.

Sebastian Weiterer (535133)
Florian Uhle (250479)
Christoph Lichtenstern (707424)
Benedikt H. Siegler (707425)
Sabin Bhuju (107606)
Michael Jarek (166845)
Marek Bartkuhn (31889)
Markus A. Weigand (535137)

March 2015

A) Heat map indicates result of un-supervised hierarchical clustering for 743 gene promoters with...

Inflammation gene members with histone acetylation in their annotated promoters.

Maria Jesus Iglesias (181896)
Sarah-Jayne Reilly (181900)
Olof Emanuelsson (90284)
Bengt Sennblad (43745)
Mohammad Pirmoradian Najafabadi (181908)
Lasse Folkersen (109487)
Anders Mälarstig (3900385)
Jens Lagergren (28086)
Per Eriksson (27642)
Anders Hamsten (62728)
Jacob Odeberg (22371)

February 2012

Listed are representative genes of the results from the integration of gene expression and ChIP-s...

Distribution of histone modification marks in the GM12878 cell line across lncRNA and protein-coding gene promoters.

Tanvir Alam (638619)
Yulia A. Medvedeva (472065)
Hui Jia (638620)
James B. Brown (638621)
Leonard Lipovich (16637)
Vladimir B. Bajic (8687)

October 2014

Figure demonstrates fraction of all promoters covered by chromatin a particular mark. Blue line c...

Open chromatin and transcription factor occupancy in functional CpG sites.

Uppala Radhakrishna (804909)
Sangeetha Vishweswaraiah (429990)
Avinash M. Veerappa (429989)
Rita Zafra (5746679)
Samet Albayrak (2734897)
Prajna H. Sitharam (5746682)
Nazia M. Saiyed (5746685)
Nitish K. Mishra (589321)
Chittibabu Guda (13806)
Ray Bahado-Singh (5746688)

September 2018

Pie charts depicting H3K27Ac histone mark layering, location of CpG sites and transcription factor b...

Enrichment of histone variants in enhancer regions.

Masashi Yukawa (10097)
Tomohiko Akiyama (202078)
Vedran Franke (523109)
Nathan Mise (265452)
Takayuki Isagawa (201875)
Yutaka Suzuki (1379)
Masataka G. Suzuki (12939)
Kristian Vlahovicek (5658394)
Kuniya Abe (64132)
Hiroyuki Aburatani (162634)
Fugaku Aoki (202084)

March 2014

Bars represent the ratios (%) of enrichment of the histone H2A (A) and H3 (B) variants ±200 bp fr...

Methylation and density patterns of CpGs and CpHs at the locations of HCP and LCP genes.

Xiaolong Yuan (4987508)
Zhonghui Li (2677027)
Shaopan Ye (4987505)
Zitao Chen (6433136)
Shuwen Huang (5347541)
Yuyi Zhong (6433139)
Hao Zhang (15339)
Jiaqi Li (220961)
Zhe Zhang (81603)

March 2019

Methylation and density patterns of CpGs at the locations of HCP (a) and LCP (b) genes. Methylation ...

Genomic distribution and association with histone modifications of MLV and SIN-MLV integrations in human HSPCs.

Arianna Moiani (278745)
Annarita Miccio (194371)
Ermanno Rizzi (31120)
Marco Severgnini (165168)
Danilo Pellin (109905)
Julia Debora Suerth (278746)
Christopher Baum (278747)
Gianluca De Bellis (31121)
Fulvio Mavilio (194321)

January 2013

Distribution of the distance of SIN-MLV (green bars) and MLV (red bars) integration sites from th...

Schematic view of histone variant enrichment in various genome regions.

Masashi Yukawa (10097)
Tomohiko Akiyama (202078)
Vedran Franke (523109)
Nathan Mise (265452)
Takayuki Isagawa (201875)
Yutaka Suzuki (1379)
Masataka G. Suzuki (12939)
Kristian Vlahovicek (5658394)
Kuniya Abe (64132)
Hiroyuki Aburatani (162634)
Fugaku Aoki (202084)

March 2014

Relative enrichment of each histone variant in various genome regions is indicated by the ellipse...

H1 is depleted at GC-rich, gene-rich regions and TSSs of active promoters.

Kaixiang Cao (158822)
Nathalie Lailler (224524)
Yunzhe Zhang (158809)
Ashwath Kumar (407053)
Karan Uppal (407054)
Zheng Liu (28397)
Eva K. Lee (407055)
Hongwei Wu (9168)
Magdalena Medrzycki (158818)
Chenyi Pan (165378)
Po-Yi Ho (165372)
Guy P. Cooper Jr (407056)
Xiao Dong (244652)
Christoph Bock (29200)
Eric E. Bouhassira (201362)
Yuhong Fan (158826)

April 2013

(A) Examples of distributions of H1 variants and histone marks at an 8 Mb- (i) and a 200 kb- (ii)...

Relation between histone modification level (summed peak heights per gene) and expression level.

Yvonne G. van der Zwan (150392)
Martin A. Rijlaarsdam (571370)
Fernando J. Rossello (463396)
Amanda J. Notini (571371)
Suzan de Boer (150413)
D. Neil Watkins (61722)
Ad J. M. Gillis (401562)
Lambert C. J. Dorssers (505758)
Stefan J. White (168397)
Leendert H. J. Looijenga (140243)

June 2014

Top and bottom right images depict the percentage of highly (>p50) expressed genes calculated ...

Gene up-regulation induced by combinatorial treatment is due to histone modifications in T24 cells.

Han Han (174736)
Xiaojing Yang (154840)
Kurinji Pandiyan (407298)
Gangning Liang (174746)

September 2013

A. Density plots for each treatment across all 450,000 CpG sites. The x-axis represents beta valu...

Genomic properties of HCNEs.

Loqmane Seridi (640918)
Taewoo Ryu (75481)
Timothy Ravasi (155072)

October 2014

(A) Violin plot illustrating that HCNEs have a higher GC content versus 10,000 random non-coding ...

Proc Natl Acad Sci USA

Karlic, R.
Chung, H.
Lasserre, J.
Vlahovicek, K.
Vingron, M.

February 2010

Histones are frequently decorated with covalent modifications. These histone modifications are thoug...

Histone H1.5 is differentially distributed in fibroblasts and embryonic stem cells.

Jing-Yu Li (139513)
Michaela Patterson (78872)
Hanna K. A. Mikkola (102967)
William E. Lowry (116165)
Siavash K. Kurdistani (139520)

August 2012

(A) Venn diagram of significant peaks of H1.5 binding in H1 hESCs and IMR90 fibroblasts by ChIP-s...

Gene positioning and biological significance of the transcription-linked histone marks.

Archna P. Gupta (180945)
Wai Hoe Chin (383889)
Lei Zhu (16642)
Sachel Mok (258479)
Yen-Hoon Luah (254333)
Eng-How Lim (383890)
Zbynek Bozdech (1561)

March 2013

The plots on the left represent the frequency (percentage) of transcription-linked histone marks ...

Cluster analysis of differential histone modification levels at transcriptional start sites reveals groups of co-regulated genes associated with immune-relevant functions.

Sebastian Weiterer (535133)
Florian Uhle (250479)
Christoph Lichtenstern (707424)
Benedikt H. Siegler (707425)
Sabin Bhuju (107606)
Michael Jarek (166845)
Marek Bartkuhn (31889)
Markus A. Weigand (535137)

March 2015

A) Heat map indicates result of un-supervised hierarchical clustering for 743 gene promoters with...

Inflammation gene members with histone acetylation in their annotated promoters.

Maria Jesus Iglesias (181896)
Sarah-Jayne Reilly (181900)
Olof Emanuelsson (90284)
Bengt Sennblad (43745)
Mohammad Pirmoradian Najafabadi (181908)
Lasse Folkersen (109487)
Anders Mälarstig (3900385)
Jens Lagergren (28086)
Per Eriksson (27642)
Anders Hamsten (62728)
Jacob Odeberg (22371)

February 2012

Listed are representative genes of the results from the integration of gene expression and ChIP-s...

Distribution of histone modification marks in the GM12878 cell line across lncRNA and protein-coding gene promoters.

Tanvir Alam (638619)
Yulia A. Medvedeva (472065)
Hui Jia (638620)
James B. Brown (638621)
Leonard Lipovich (16637)
Vladimir B. Bajic (8687)

October 2014

Figure demonstrates fraction of all promoters covered by chromatin a particular mark. Blue line c...

Open chromatin and transcription factor occupancy in functional CpG sites.

Uppala Radhakrishna (804909)
Sangeetha Vishweswaraiah (429990)
Avinash M. Veerappa (429989)
Rita Zafra (5746679)
Samet Albayrak (2734897)
Prajna H. Sitharam (5746682)
Nazia M. Saiyed (5746685)
Nitish K. Mishra (589321)
Chittibabu Guda (13806)
Ray Bahado-Singh (5746688)

September 2018

Pie charts depicting H3K27Ac histone mark layering, location of CpG sites and transcription factor b...

Enrichment of histone variants in enhancer regions.

Masashi Yukawa (10097)
Tomohiko Akiyama (202078)
Vedran Franke (523109)
Nathan Mise (265452)
Takayuki Isagawa (201875)
Yutaka Suzuki (1379)
Masataka G. Suzuki (12939)
Kristian Vlahovicek (5658394)
Kuniya Abe (64132)
Hiroyuki Aburatani (162634)
Fugaku Aoki (202084)

March 2014

Bars represent the ratios (%) of enrichment of the histone H2A (A) and H3 (B) variants ±200 bp fr...

Enrichment of histone variants around the TSS with promoters of high and low CpG density.

Abstract

Extracted data

Enrichment of histone variants around the TSS with promoters of high and low CpG density.

Abstract

Extracted data

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