<p>The genome was divided into 150 nucleotide bins, and the bins in which a particular variant was significantly enriched was determined as described in Materials and Methods (<i>see </i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0092689#pone.0092689.s004" target="_blank">Figure S4</a>). (A) Boxplot of H3K4me3 levels in H2A-and-H3-variant-enriched bins. (B) Boxplot of H3K4me3 levels in H2A.Z- or H3.3-, and both H2A.Z and H3.3 (H2A.Z/H3.3)-enriched bins. The bottom and top of the box are the 25th and 75th percentile, respectively, and the upper and lower whiskers represent 2.5th and 97.5th percentile, respectively. <i>P</i>-values were calculated using Mann–Whitney U-tests; (*) <i>P</i><0.001.</p
<p><b>A–D</b>. Examples are shown of Pol III-bound genes that intersect with H3K27me3 (within 2 kb)....
Additional file 3. Abundance of H4 peptides used for normalization. The nucleosome contains two copi...
<p>(a) Normalized testis H2A.Z ChIP-Seq reads ranked according to their expression level (repressed,...
<p>The genome was divided into 150 nucleotide bins, and the bins in which a particular variant was s...
<p>A. Genome-browser views of a transposable element on chromosome 3 (left) and of a heterochromatic...
<p>(A) Smoothed density of H3 (blue), IgG (light grey), H3.1 (orange), H3.3 (green) and H3K9me2 (dar...
<p>Profiles of H3K27me3 patterns of the four sets genes were shown across the gene bodies. The class...
(A) and (B) display the percentage of sequence coverage of core and accessory chromosomes with H3K9m...
(A) Confocal images of salivary glands from wild type and H3.3BK27R male third instar larvae stained...
<p>(A) Pie chart depicting the distribution of H3K4me3 and H3K27me3 marks at promoter regions of gen...
<p><b>A.</b> The metaplot depicts the enrichment pattern of H3K4 trimethylation (H3K4me3), H3K36 tri...
<p>(A) Genome browser tracks of indicated ChIP signals across representative regions of chromosome I...
<p>(A) RT-qPCR analysis of <i>HCF173</i> mRNA levels in wild-type and in <i>hub1-3</i> mutant seedli...
Minimum and maximum values refer to the chromosomes showing highest or lowest sequence coverage with...
*<p>Asterisk indicates that the proportion of the indicated gene type is significantly different fro...
<p><b>A–D</b>. Examples are shown of Pol III-bound genes that intersect with H3K27me3 (within 2 kb)....
Additional file 3. Abundance of H4 peptides used for normalization. The nucleosome contains two copi...
<p>(a) Normalized testis H2A.Z ChIP-Seq reads ranked according to their expression level (repressed,...
<p>The genome was divided into 150 nucleotide bins, and the bins in which a particular variant was s...
<p>A. Genome-browser views of a transposable element on chromosome 3 (left) and of a heterochromatic...
<p>(A) Smoothed density of H3 (blue), IgG (light grey), H3.1 (orange), H3.3 (green) and H3K9me2 (dar...
<p>Profiles of H3K27me3 patterns of the four sets genes were shown across the gene bodies. The class...
(A) and (B) display the percentage of sequence coverage of core and accessory chromosomes with H3K9m...
(A) Confocal images of salivary glands from wild type and H3.3BK27R male third instar larvae stained...
<p>(A) Pie chart depicting the distribution of H3K4me3 and H3K27me3 marks at promoter regions of gen...
<p><b>A.</b> The metaplot depicts the enrichment pattern of H3K4 trimethylation (H3K4me3), H3K36 tri...
<p>(A) Genome browser tracks of indicated ChIP signals across representative regions of chromosome I...
<p>(A) RT-qPCR analysis of <i>HCF173</i> mRNA levels in wild-type and in <i>hub1-3</i> mutant seedli...
Minimum and maximum values refer to the chromosomes showing highest or lowest sequence coverage with...
*<p>Asterisk indicates that the proportion of the indicated gene type is significantly different fro...
<p><b>A–D</b>. Examples are shown of Pol III-bound genes that intersect with H3K27me3 (within 2 kb)....
Additional file 3. Abundance of H4 peptides used for normalization. The nucleosome contains two copi...
<p>(a) Normalized testis H2A.Z ChIP-Seq reads ranked according to their expression level (repressed,...