<p>Enriched (+) and non-enriched (−) cDNAs of <i>S</i>. Typhimurium parental (black) or ppGpp<sup>0</sup> (<i>ΔrelAΔspoT</i>) (red) strains mapped onto the SPI1 and SPI2 loci. Operons are indicated by horizontal arrows and annotated according to the first gene. The Y axis in each lane represents 0–50 mapped reads per genome position. The dRNA-seq data for ESP was from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0092690#pone.0092690-Ramachandran1" target="_blank">[19]</a>.</p
<p>(A) Genetic organization of the <i>ynfB-speG</i> operon in EIEC strains. The operon at the top is...
Schlueter J-P, Reinkensmeier J, Barnett MJ, et al. Global mapping of transcription start sites and p...
<p>In the operon, the <i>rrs-rrl</i> intergenic spacer (IGS) separates the <i>rrs</i> (16S) gene fro...
<p>Enriched (+) and non-enriched (−) cDNAs of <i>S</i>. Typhimurium SL1344 parent (black) or ppGpp<s...
<p>Horizontal arrows represent individual SPI2 genes in scale with the whole Island. The <i>ssrA</i>...
<p>(A–C) Graphs showing H-NS (filled circle) and RNAP binding (open circle) over the <i>rrnA</i> loc...
<p>(A) Differential expression (> 2-fold) of known SPI1 and SPI2 activators at LSP and ESP in the Δ<...
<p>(A) Schematic representation of the gene organization of SPβ-like elements at the <i>spsM</i> loc...
<p>(A) Venn diagrams showing the number of oligonucleotide probes corresponding to intergenic region...
Differential expression analysis of orthologous coding genes and sRNAs between strains D23580 and 4/...
<p>(A) western blot showing intracellular levels of RpoS, DksA, SipC and GroEL (loading control) at ...
<p>Arrowed bars indicate direction of <i>luxS</i> and <i>gshA</i> transcription/translation. MicA is...
<p>(A, E) SPI1 and SPI2 transcript levels in parent strain (SL1344); 1, 2, and 3 indicate biological...
<p>A. The designation of each Δ<i>spoT</i> clone characterized in this work is indicated below the <...
<p>The data from the RNAP and H-NS ChIP-on-chip experiments are shown using coloured concentric circ...
<p>(A) Genetic organization of the <i>ynfB-speG</i> operon in EIEC strains. The operon at the top is...
Schlueter J-P, Reinkensmeier J, Barnett MJ, et al. Global mapping of transcription start sites and p...
<p>In the operon, the <i>rrs-rrl</i> intergenic spacer (IGS) separates the <i>rrs</i> (16S) gene fro...
<p>Enriched (+) and non-enriched (−) cDNAs of <i>S</i>. Typhimurium SL1344 parent (black) or ppGpp<s...
<p>Horizontal arrows represent individual SPI2 genes in scale with the whole Island. The <i>ssrA</i>...
<p>(A–C) Graphs showing H-NS (filled circle) and RNAP binding (open circle) over the <i>rrnA</i> loc...
<p>(A) Differential expression (> 2-fold) of known SPI1 and SPI2 activators at LSP and ESP in the Δ<...
<p>(A) Schematic representation of the gene organization of SPβ-like elements at the <i>spsM</i> loc...
<p>(A) Venn diagrams showing the number of oligonucleotide probes corresponding to intergenic region...
Differential expression analysis of orthologous coding genes and sRNAs between strains D23580 and 4/...
<p>(A) western blot showing intracellular levels of RpoS, DksA, SipC and GroEL (loading control) at ...
<p>Arrowed bars indicate direction of <i>luxS</i> and <i>gshA</i> transcription/translation. MicA is...
<p>(A, E) SPI1 and SPI2 transcript levels in parent strain (SL1344); 1, 2, and 3 indicate biological...
<p>A. The designation of each Δ<i>spoT</i> clone characterized in this work is indicated below the <...
<p>The data from the RNAP and H-NS ChIP-on-chip experiments are shown using coloured concentric circ...
<p>(A) Genetic organization of the <i>ynfB-speG</i> operon in EIEC strains. The operon at the top is...
Schlueter J-P, Reinkensmeier J, Barnett MJ, et al. Global mapping of transcription start sites and p...
<p>In the operon, the <i>rrs-rrl</i> intergenic spacer (IGS) separates the <i>rrs</i> (16S) gene fro...