<p>(A) Histograms showing the frequency of the SILAC log<sub>2</sub> ratios of proteins in cytoplasmic (top panel) and nuclear (bottom panel) fractions from DENV-2 (DV2) and mock infected cells. The log<sub>2</sub> ratios were grouped into bins. The number of ratios per bin is shown on the <i>y</i>-axis. The cut-off points for 1.5 and 2 fold (log<sub>2</sub> values of ± 0.585 and 1 respectively) increases and decreases from the median values are shown. (B) A Venn diagram showing the number of proteins that were detected either in both the cytoplasmic and nuclear fractions or exclusively in each fraction. (C) A scatter plot showing the nuclear (<i>y</i>-axis) and cytoplasmic (<i>x</i>-axis) SILAC log<sub>2</sub> DV-2/mock ratios for the 1361...
<p>Western-Blot results comparing expression levels of selected 15 proteins to their SILAC ratios (r...
<p>(A), histogram of log<sub>2</sub> SILAC ratios. (B), Venn diagram of DEGs identified in SILAC and...
<p>(A) Cytosolic (Cy) and nuclear (Nu) fractions were prepared as described in Materials and Methods...
<p>SILAC labeled A549 cells that had been either DENV-2 (DV2) or mock (Mo) infected were harvested a...
<p>A. Schematic representation of the SILAC approach. Proteins of HepG2 cells were labelled with eit...
<p>(A) SILAC L:M:H average ratios for six selected proteins. (B) Western blotting analysis of select...
<p>(A) Venn diagrams of numbers of identified proteins from individual experiments. (B) Ratios of KK...
<p>(A) HA-HisSUMO2 cells were maintained in either SILAC L or H media (see <a href="http://www.plosp...
<p>(A) A549 cells and (B) HEK-293 cells were infected with DENV-2 (DV2) at a m.o.i. of 3 or mock (Mo...
<p>(A) Volcano plot of protein abundance changes at 36h post Sec15 RNAi induction. -log<sub>10</sub>...
<p>(A) A549 cells were infected with DENV-2 at a m.o.i. of 5. Samples of the culture supernatant wer...
<p>Log2 SILAC ratios (BJAB-EBER1/2 <i>vs</i> BJAB-CTL) plotted against the number of proteins identi...
A. Diagram of the Ratio of Ratios (RoR) paradigm. “Heavy” denotes SILAC labeled (Arg+10 and Lys+8) c...
<p>(<b>A</b>) Design of the triple-encoding SILAC pull down experiments (see text). Comparison of mC...
<p>Proteins were sorted and plotted by SILAC ratio. As expected for a 1∶1 mixture, most proteins sho...
<p>Western-Blot results comparing expression levels of selected 15 proteins to their SILAC ratios (r...
<p>(A), histogram of log<sub>2</sub> SILAC ratios. (B), Venn diagram of DEGs identified in SILAC and...
<p>(A) Cytosolic (Cy) and nuclear (Nu) fractions were prepared as described in Materials and Methods...
<p>SILAC labeled A549 cells that had been either DENV-2 (DV2) or mock (Mo) infected were harvested a...
<p>A. Schematic representation of the SILAC approach. Proteins of HepG2 cells were labelled with eit...
<p>(A) SILAC L:M:H average ratios for six selected proteins. (B) Western blotting analysis of select...
<p>(A) Venn diagrams of numbers of identified proteins from individual experiments. (B) Ratios of KK...
<p>(A) HA-HisSUMO2 cells were maintained in either SILAC L or H media (see <a href="http://www.plosp...
<p>(A) A549 cells and (B) HEK-293 cells were infected with DENV-2 (DV2) at a m.o.i. of 3 or mock (Mo...
<p>(A) Volcano plot of protein abundance changes at 36h post Sec15 RNAi induction. -log<sub>10</sub>...
<p>(A) A549 cells were infected with DENV-2 at a m.o.i. of 5. Samples of the culture supernatant wer...
<p>Log2 SILAC ratios (BJAB-EBER1/2 <i>vs</i> BJAB-CTL) plotted against the number of proteins identi...
A. Diagram of the Ratio of Ratios (RoR) paradigm. “Heavy” denotes SILAC labeled (Arg+10 and Lys+8) c...
<p>(<b>A</b>) Design of the triple-encoding SILAC pull down experiments (see text). Comparison of mC...
<p>Proteins were sorted and plotted by SILAC ratio. As expected for a 1∶1 mixture, most proteins sho...
<p>Western-Blot results comparing expression levels of selected 15 proteins to their SILAC ratios (r...
<p>(A), histogram of log<sub>2</sub> SILAC ratios. (B), Venn diagram of DEGs identified in SILAC and...
<p>(A) Cytosolic (Cy) and nuclear (Nu) fractions were prepared as described in Materials and Methods...