<p>We present as a parallel plot the bootstrapped median RMSE for stabilizing and destabilizing mutation, average best overlap for domains and loop movements as well as self-consistency bias and errors. In the right-most four columns with include the logarithm of the 4 alpha variables. Different parameter sets are colored based on b-factors correlations (red gradient) or domain movement overlaps (blue gradient). The black line represent the specific set of parameters used in ENCoM while the dashed line represents the values for ENCoM using the set of alpha parameters employed in STeM. There is a dichotomy in parameter space such that most sets of parameters are either good at predicting b-factors or overlap and mutations.</p
<p>Average likelihoods to be the starting element of a contour of length , shown for all edge eleme...
<p>The red line is a fitted linear regression, and the red tube represents its 95-confidence interva...
Specificities of 10 prediction tools for variants with different AFs. The black horizontal line indi...
<p>Box plots represent the average correlations from a non-redundant dataset containing 113 proteins...
<p>We calculate the RMSE difference (<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/j...
<p>The best overlap found within the 10 slowest internal motion modes for different NMA models on do...
<p>RMSE of the linear regression through the origin between experimental and predicted variations in...
<p>The best overlap found within the 10 slowest internal motion modes for different NMA models on lo...
<p>Performance is measured by Relative Predictive Gain (RPG). True PVE = 0.6. Means and standard dev...
<p>Dashes denote cases where the known mutation was not enriched in the predicted sequences using no...
In each matrix, rows represent true conditions and columns represent predicted conditions. The numbe...
Relative parameter importance inferred for four parameter categories. 1) Adaptation: parameters desc...
<p>The ratio of the mean squared error (MSE) of the RR estimate to that of the MAP estimator is plot...
<p>Mutation frequencies as predicted by the generalized linear model (large dots) and observed frequ...
<p>A) Mean fraction of variance explained by tuning as a function of network size for simulated, ind...
<p>Average likelihoods to be the starting element of a contour of length , shown for all edge eleme...
<p>The red line is a fitted linear regression, and the red tube represents its 95-confidence interva...
Specificities of 10 prediction tools for variants with different AFs. The black horizontal line indi...
<p>Box plots represent the average correlations from a non-redundant dataset containing 113 proteins...
<p>We calculate the RMSE difference (<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/j...
<p>The best overlap found within the 10 slowest internal motion modes for different NMA models on do...
<p>RMSE of the linear regression through the origin between experimental and predicted variations in...
<p>The best overlap found within the 10 slowest internal motion modes for different NMA models on lo...
<p>Performance is measured by Relative Predictive Gain (RPG). True PVE = 0.6. Means and standard dev...
<p>Dashes denote cases where the known mutation was not enriched in the predicted sequences using no...
In each matrix, rows represent true conditions and columns represent predicted conditions. The numbe...
Relative parameter importance inferred for four parameter categories. 1) Adaptation: parameters desc...
<p>The ratio of the mean squared error (MSE) of the RR estimate to that of the MAP estimator is plot...
<p>Mutation frequencies as predicted by the generalized linear model (large dots) and observed frequ...
<p>A) Mean fraction of variance explained by tuning as a function of network size for simulated, ind...
<p>Average likelihoods to be the starting element of a contour of length , shown for all edge eleme...
<p>The red line is a fitted linear regression, and the red tube represents its 95-confidence interva...
Specificities of 10 prediction tools for variants with different AFs. The black horizontal line indi...