<p>Support for nodes is indicated by % bootstrap support (out of 1000) in the ML analysis and by posterior probabilities from two Bayesian analyses, one employing the LG model of amino acids substitution, and the other using the CAT model (RAxML LG+Γ+F/Phylobayes LG+Γ/Phylobayes CAT+Γ), where greater than 50% bootstrap support or 0.9 posterior probability. The subject of this study, <i>Voromonas pontica</i>, is indicated by white text on a black background. Hatch marks indicate branches whose lengths have been reduced by half.</p
<p>(see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030520#s3" target="_b...
<p>Numbers above the branches show support for the phylogenies from amino acid sequences whereas num...
<p>For each strain, the phylogenetic affiliation is mentioned between brackets and the pigment type ...
<p>The tree was inferred under LG, RtREV, and CAT amino acids substitution models using 4 Γ categori...
<p>Support for nodes is indicated by % bootstrap support (out of 1000) in the ML analysis and by pos...
<p>The tree was inferred under LG, RtREV, and CAT amino acids substitution models using 4 Γ categori...
<p>Numbers indicate posterior probability values. Branches without values are supported by posterior...
<p>The tree displayed was generated using RaxML with 1000 rapid bootstrap according to the LG+I+G ev...
<p>Bayesian and likelihood methods gave the same tree topology (only the Bayesian tree is shown). Th...
<p>The tree displayed was generated using RaxML with 1000 rapid bootstrap according to the model WAG...
. Neighbor-joining minimum evolution tree (ME-score = 1.750) with bootstrap values (percentage of 10...
<p>(see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030520#s3" target="_b...
<p>The numbers at the nodes indicate posterior probabilities/bootstrap supports. Nodes highlighted w...
Markov models of codon substitution naturally incorporate the structure of the genetic code and the ...
<p>A) Minimum evolution (ME; SBL = 23.62); B) Maximum Likelihood (ML; -lnL = 68687.39); C) Bayesian ...
<p>(see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030520#s3" target="_b...
<p>Numbers above the branches show support for the phylogenies from amino acid sequences whereas num...
<p>For each strain, the phylogenetic affiliation is mentioned between brackets and the pigment type ...
<p>The tree was inferred under LG, RtREV, and CAT amino acids substitution models using 4 Γ categori...
<p>Support for nodes is indicated by % bootstrap support (out of 1000) in the ML analysis and by pos...
<p>The tree was inferred under LG, RtREV, and CAT amino acids substitution models using 4 Γ categori...
<p>Numbers indicate posterior probability values. Branches without values are supported by posterior...
<p>The tree displayed was generated using RaxML with 1000 rapid bootstrap according to the LG+I+G ev...
<p>Bayesian and likelihood methods gave the same tree topology (only the Bayesian tree is shown). Th...
<p>The tree displayed was generated using RaxML with 1000 rapid bootstrap according to the model WAG...
. Neighbor-joining minimum evolution tree (ME-score = 1.750) with bootstrap values (percentage of 10...
<p>(see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030520#s3" target="_b...
<p>The numbers at the nodes indicate posterior probabilities/bootstrap supports. Nodes highlighted w...
Markov models of codon substitution naturally incorporate the structure of the genetic code and the ...
<p>A) Minimum evolution (ME; SBL = 23.62); B) Maximum Likelihood (ML; -lnL = 68687.39); C) Bayesian ...
<p>(see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030520#s3" target="_b...
<p>Numbers above the branches show support for the phylogenies from amino acid sequences whereas num...
<p>For each strain, the phylogenetic affiliation is mentioned between brackets and the pigment type ...