Genetic marker discovery.

<p>Polymorphic sites identified in the transcriptome of DV92 (blue) and G3116 (red). (A) Number of SSR identified in the transcriptomes. (B) Number of SNPs identified in the two genotypes by aligning against the sequenced barley reference genome. 9,808 out of 340,250 common SNP sites have polymorphism between DV92 and G3116. (C) Mapping of common, variable 9,808 SNP and 148 SSR sites identified in the DV92 and G3116 transcriptomes on the karyotype view of the reference barley genome hosted by the Ensembl Plants. The SNP sites are shown as red colored density plot and SSR sites are depicted as black triangles along the length of the respective barley chromosomes.