Biological functions tackled in modules of CNV-ICC-TRN.

Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network

Jailkhani, Noor
Ravichandran, Srikanth
Hegde, Shubhada R.
Siddiqui, Zaved
Mande, Shekhar C.
Rao, Kanury V. S.

August 2011

Drug development efforts against cancer are often hampered by the complex properties of signaling ne...

Pathway analysis of differentially expressed proteins.

Daniela C. Granato (568119)
Mariana R. Zanetti (311375)
Rebeca Kawahara (311378)
Sami Yokoo (311376)
Romênia R. Domingues (311377)
Annelize Z. Aragão (568120)
Michelle Agostini (311380)
Marcelo F. Carazzolle (121968)
Ramon O. Vidal (121962)
Isadora L. Flores (568121)
Johanna Korvala (568122)
Nilva K. Cervigne (568123)
Alan R. S. Silva (568124)
Ricardo D. Coletta (311383)
Edgard Graner (311381)
Nicholas E. Sherman (164556)
Adriana F. Paes Leme (113957)

May 2014

(a) The highest score network generated by IPA comprised 23 differentially expressed proteins (up...

A diagram reflecting the signaling systems of a cancer cell.

Songjian Lu (406224)
Kevin N. Lu (789990)
Shi-Yuan Cheng (131531)
Bo Hu (126105)
Xiaojun Ma (231882)
Nicholas Nystrom (789991)
Xinghua Lu (4638)

August 2015

A signal pathway usually consists of a cascade of proteins, represented as rectangle (receptors) ...

Integrative analysis of CNV-ICC-TRN and KEGG signaling pathways.

Ling Li (38566)
Baofeng Lian (572694)
Chao Li (145513)
Wei Li (7081)
Jing Li (10611)
Yuannv Zhang (385506)
Xianghuo He (123411)
Yixue Li (18673)
Lu Xie (55571)

June 2014

(A). Integrated network of CNV-ICC-TRN and KEGG signaling pathways. Triangle represents TF, circl...

Provisional atlas of TRN modules for cardiac lineage development.

Hailin Chen (410838)
Vincent VanBuren (2378)

January 2014

Nodes are labeled with module index numbers. Node diameter is proportional to the log10</sub...

A Data and Knowledge Base for Cell Signaling Networks, Genome Informatics Workshop

Takako Igarashi
Yoko Nadaoka
Tsuguchika Kaminuma

January 1995

Each cell in a multicellular animal is programmed during development to respond to speci c outer che...

Schematic summary of CNT mediated signaling pathway related with anti-angiogenic activity.

Seung Ya Yang (541930)
Nam Hee Kim (306124)
Yoon Sun Cho (541931)
Hukeun Lee (541932)
Ho Jeong Kwon (43971)

March 2014

Schematic summary of CNT mediated signaling pathway related with anti-angiogenic activity.</p

Modular feedback

Niehrs, C.
Meinhardt, H.

May 2002

To understand cell signalling during development, we need to know how whole signalling networks — no...

Overview of module subtype and size in CNV-ICC-TRN.

Ling Li (38566)
Baofeng Lian (572694)
Chao Li (145513)
Wei Li (7081)
Jing Li (10611)
Yuannv Zhang (385506)
Xianghuo He (123411)
Yixue Li (18673)
Lu Xie (55571)

June 2014

In both A and B figures, blue color represents CNV-gene-only enriched module, green color represe...

Enriched canonical pathways in the HEV ORF3 protein and human protein interaction network (p≦0.05).

Yansheng Geng (284018)
Jun Yang (2084)
Weijin Huang (284019)
Tim J. Harrison (226082)
Yan Zhou (6523)
Zhiheng Wen (284020)
Youchun Wang (284021)

February 2013

The canonical pathways are mapped to the x-axisand the y-axis represents the % of genes mapped to...

Sub-networks of DEGs and genes with differential H3K4me3.

Xianjun Dong (528358)
Junko Tsuji (833750)
Adam Labadorf (205504)
Panos Roussos (318249)
Jiang-Fan Chen (2196526)
Richard H. Myers (117752)
Schahram Akbarian (117762)
Zhiping Weng (51233)

December 2015

Each node represents a gene; the fill color of each node indicates the fold-change of gene expres...

Canonical pathways analysis of the differential proteins.

Eduardo Anitua (460933)
María de la Fuente (284946)
Francisco Muruzabal (5851412)
Ronald Mauricio Sánchez-Ávila (5851415)
Jesús Merayo-Lloves (3364238)
Mikel Azkargorta (1590436)
Felix Elortza (505721)
Gorka Orive (460938)

October 2018

The most significantly enriched canonical pathways (–log p values in the y axis) are displayed. The ...

Subpathways in the Wnt signaling pathway identified by Sub-SPIA on CRC dataset.

Xianbin Li (401049)
Liangzhong Shen (775036)
Xuequn Shang (775037)
Wenbin Liu (174604)

July 2015

(A) The insulin-signal pathway with DEGs highlighted. (B) Gene network obtained by graphite packa...

CNV miRNA pathway showing the CNV burden of miRNA genes and its interaction with target proteins indicating the involvement in biological functions and diseases.

Avinash M. Veerappa (429989)
Megha Murthy N (529201)
Sangeetha Vishweswaraiah (429990)
Kusuma Lingaiah (429991)
Raviraj V. Suresh (529202)
Somanna Ajjamada Nachappa (529203)
Nelchi Prashali (529204)
Sangeetha Nuggehalli Yadav (529205)
Manjula Arsikere Srikanta (529206)
Dinesh S. Manjegowda (429993)
Keshava B. Seshachalam (529207)
Nallur B. Ramachandra (429995)

February 2014

CNV miRNA pathway showing the CNV burden of miRNA genes and its interaction with target proteins ...

Network pathway analysis of mRNA messages associated with GRTH in testicular polysomes of WT mice.

Chon-Hwa Tsai-Morris (175090)
Hisashi Sato (175093)
Ravi Gutti (175095)
Maria L. Dufau (175100)

March 2012

(A–E). Five different top score of the associated network pathway predicted by the ingenui...

Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network

Jailkhani, Noor
Ravichandran, Srikanth
Hegde, Shubhada R.
Siddiqui, Zaved
Mande, Shekhar C.
Rao, Kanury V. S.

August 2011

Drug development efforts against cancer are often hampered by the complex properties of signaling ne...

Pathway analysis of differentially expressed proteins.

Daniela C. Granato (568119)
Mariana R. Zanetti (311375)
Rebeca Kawahara (311378)
Sami Yokoo (311376)
Romênia R. Domingues (311377)
Annelize Z. Aragão (568120)
Michelle Agostini (311380)
Marcelo F. Carazzolle (121968)
Ramon O. Vidal (121962)
Isadora L. Flores (568121)
Johanna Korvala (568122)
Nilva K. Cervigne (568123)
Alan R. S. Silva (568124)
Ricardo D. Coletta (311383)
Edgard Graner (311381)
Nicholas E. Sherman (164556)
Adriana F. Paes Leme (113957)

May 2014

(a) The highest score network generated by IPA comprised 23 differentially expressed proteins (up...

A diagram reflecting the signaling systems of a cancer cell.

Songjian Lu (406224)
Kevin N. Lu (789990)
Shi-Yuan Cheng (131531)
Bo Hu (126105)
Xiaojun Ma (231882)
Nicholas Nystrom (789991)
Xinghua Lu (4638)

August 2015

A signal pathway usually consists of a cascade of proteins, represented as rectangle (receptors) ...

Integrative analysis of CNV-ICC-TRN and KEGG signaling pathways.

Ling Li (38566)
Baofeng Lian (572694)
Chao Li (145513)
Wei Li (7081)
Jing Li (10611)
Yuannv Zhang (385506)
Xianghuo He (123411)
Yixue Li (18673)
Lu Xie (55571)

June 2014

(A). Integrated network of CNV-ICC-TRN and KEGG signaling pathways. Triangle represents TF, circl...

Provisional atlas of TRN modules for cardiac lineage development.

Hailin Chen (410838)
Vincent VanBuren (2378)

January 2014

Nodes are labeled with module index numbers. Node diameter is proportional to the log10</sub...

A Data and Knowledge Base for Cell Signaling Networks, Genome Informatics Workshop

Takako Igarashi
Yoko Nadaoka
Tsuguchika Kaminuma

January 1995

Each cell in a multicellular animal is programmed during development to respond to speci c outer che...

Schematic summary of CNT mediated signaling pathway related with anti-angiogenic activity.

Seung Ya Yang (541930)
Nam Hee Kim (306124)
Yoon Sun Cho (541931)
Hukeun Lee (541932)
Ho Jeong Kwon (43971)

March 2014

Schematic summary of CNT mediated signaling pathway related with anti-angiogenic activity.</p

Modular feedback

Niehrs, C.
Meinhardt, H.

May 2002

To understand cell signalling during development, we need to know how whole signalling networks — no...

Overview of module subtype and size in CNV-ICC-TRN.

Ling Li (38566)
Baofeng Lian (572694)
Chao Li (145513)
Wei Li (7081)
Jing Li (10611)
Yuannv Zhang (385506)
Xianghuo He (123411)
Yixue Li (18673)
Lu Xie (55571)

June 2014

In both A and B figures, blue color represents CNV-gene-only enriched module, green color represe...

Enriched canonical pathways in the HEV ORF3 protein and human protein interaction network (p≦0.05).

Yansheng Geng (284018)
Jun Yang (2084)
Weijin Huang (284019)
Tim J. Harrison (226082)
Yan Zhou (6523)
Zhiheng Wen (284020)
Youchun Wang (284021)

February 2013

The canonical pathways are mapped to the x-axisand the y-axis represents the % of genes mapped to...

Sub-networks of DEGs and genes with differential H3K4me3.

Xianjun Dong (528358)
Junko Tsuji (833750)
Adam Labadorf (205504)
Panos Roussos (318249)
Jiang-Fan Chen (2196526)
Richard H. Myers (117752)
Schahram Akbarian (117762)
Zhiping Weng (51233)

December 2015

Each node represents a gene; the fill color of each node indicates the fold-change of gene expres...

Canonical pathways analysis of the differential proteins.

Eduardo Anitua (460933)
María de la Fuente (284946)
Francisco Muruzabal (5851412)
Ronald Mauricio Sánchez-Ávila (5851415)
Jesús Merayo-Lloves (3364238)
Mikel Azkargorta (1590436)
Felix Elortza (505721)
Gorka Orive (460938)

October 2018

The most significantly enriched canonical pathways (–log p values in the y axis) are displayed. The ...

Subpathways in the Wnt signaling pathway identified by Sub-SPIA on CRC dataset.

Xianbin Li (401049)
Liangzhong Shen (775036)
Xuequn Shang (775037)
Wenbin Liu (174604)

July 2015

(A) The insulin-signal pathway with DEGs highlighted. (B) Gene network obtained by graphite packa...

CNV miRNA pathway showing the CNV burden of miRNA genes and its interaction with target proteins indicating the involvement in biological functions and diseases.

Avinash M. Veerappa (429989)
Megha Murthy N (529201)
Sangeetha Vishweswaraiah (429990)
Kusuma Lingaiah (429991)
Raviraj V. Suresh (529202)
Somanna Ajjamada Nachappa (529203)
Nelchi Prashali (529204)
Sangeetha Nuggehalli Yadav (529205)
Manjula Arsikere Srikanta (529206)
Dinesh S. Manjegowda (429993)
Keshava B. Seshachalam (529207)
Nallur B. Ramachandra (429995)

February 2014

CNV miRNA pathway showing the CNV burden of miRNA genes and its interaction with target proteins ...

Network pathway analysis of mRNA messages associated with GRTH in testicular polysomes of WT mice.

Chon-Hwa Tsai-Morris (175090)
Hisashi Sato (175093)
Ravi Gutti (175095)
Maria L. Dufau (175100)

March 2012

(A–E). Five different top score of the associated network pathway predicted by the ingenui...

Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network

Jailkhani, Noor
Ravichandran, Srikanth
Hegde, Shubhada R.
Siddiqui, Zaved
Mande, Shekhar C.
Rao, Kanury V. S.

August 2011

Drug development efforts against cancer are often hampered by the complex properties of signaling ne...

Pathway analysis of differentially expressed proteins.

Daniela C. Granato (568119)
Mariana R. Zanetti (311375)
Rebeca Kawahara (311378)
Sami Yokoo (311376)
Romênia R. Domingues (311377)
Annelize Z. Aragão (568120)
Michelle Agostini (311380)
Marcelo F. Carazzolle (121968)
Ramon O. Vidal (121962)
Isadora L. Flores (568121)
Johanna Korvala (568122)
Nilva K. Cervigne (568123)
Alan R. S. Silva (568124)
Ricardo D. Coletta (311383)
Edgard Graner (311381)
Nicholas E. Sherman (164556)
Adriana F. Paes Leme (113957)

May 2014

(a) The highest score network generated by IPA comprised 23 differentially expressed proteins (up...

A diagram reflecting the signaling systems of a cancer cell.

Songjian Lu (406224)
Kevin N. Lu (789990)
Shi-Yuan Cheng (131531)
Bo Hu (126105)
Xiaojun Ma (231882)
Nicholas Nystrom (789991)
Xinghua Lu (4638)

August 2015

A signal pathway usually consists of a cascade of proteins, represented as rectangle (receptors) ...

Biological functions tackled in modules of CNV-ICC-TRN.

Abstract

Extracted data

Biological functions tackled in modules of CNV-ICC-TRN.

Abstract

Extracted data

Related items

Related items