Using GenAMap to find eQTLs in yeast data.

<p>GenAMap provides many tools for analysts to explore association results while using the structure of the data to guide the discovery of associations. We demonstrate some of these tools. A) The analyst can zoom into certain regions to see finer detail of the SNP-phenotypic trait associations. This panel is a zoomed-in region from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0097524#pone-0097524-g006" target="_blank">Figure 6</a>. B) The analyst switches to the JUNG view to explore the genes associated with the region and perform a GO enrichment test. C) The analyst colors the genes by strength of association to the genomic region. D) The analyst selects up to ten interesting genes (salmon colored) and views the Manhattan plot of associations from these genes across the genome. E) The analyst zooms into interesting regions in the genome view. F) The analyst can switch between association tests for further insight into the associations.