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Data Protection

Genotype Analysis of 5 SNPs by recessive and dominant models.

Fang Lu (45632)
Huaijin Guan (577090)
Bo Gong (217867)
Xiaoqi Liu (45630)
Rongrong Zhu (577091)
Yong Wang (12837)
Jingjing Qian (577092)
Tianqiu Zhou (577093)
Xiaoyan Lan (577094)
Pu Wang (171923)
Ying Lin (16144)
Shi Ma (217876)
He Lin (217878)
Xiong Zhu (535481)
Rong Chen (29176)
Xianjun Zhu (144118)
Yi Shi (169113)
Zhenglin Yang (24489)

Publication date

June 2014

DOI

10.1371/journal.pone.0099580.t004

Abstract

<p>*<i>P_rec</i>, the <i>P</i> value of recessive model, <i>P_dom</i>, the P value of dominant model;</p><p>**OR, the odds ratio of homozygote; CI, Confidence Interval.</p

Extracted data

Related items

Odds-ratio for association between genotypes and traits that might be detected with a power of 0.8 at the specified minor allele frequency.

Albert O. Edwards (93062)
Sung J. Lee (93063)
Brooke L. Fridley (93064)
Nirubol Tosakulwong (93065)

February 2013

*<p>Abbreviations and definitions are given in <a href="http://www.plosone.org/article/info:doi/10.1...

Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.

Ya-Feng Li (157004)
Xiao-Ming Zhu (157007)
Fan Liu (27437)
Chuan-Shi Xiao (157014)
Yun-Fei Bian (157019)
Hong Li (20183)
Jun Cai (157029)
Rong-Shan Li (157036)
Xin-Chun Yang (157044)

June 2012

<p>Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.</p

Frequencies of estimated haplotypes and test statistics between responders and non-responders.

Ran Huo (165404)
Kefu Tang (165408)
Zhiyun Wei (165410)
Lu Shen (161789)
Yuyu Xiong (165413)
Xi Wu (128938)
Jiamin Niu (165420)
Xia Han (73012)
Zhengan Tian (165425)
Lun Yang (165433)
Guoyin Feng (165438)
Lin He (102807)
Shengying Qin (165450)

May 2012

<p>Only haplotypes with a frequency higher than 3% are listed.</p><p>OR: Odds ratio; CI: confidence ...

SNPs genotypes frequencies of the 4 SNPs in the 2 subtype groups.

Zhen Guan (510775)
Jianhua Wang (159545)
Jin Guo (102574)
Fang Wang (105926)
Xiuwei Wang (510776)
Guannan Li (510777)
Qiu Xie (510778)
Xu Han (141301)
Bo Niu (102579)
Ting Zhang (102583)

January 2014

<p>Abbreviations: SNP, single-nucleotide polymorphism; <i>OR</i>, odds ratio; <i>CI</i>, confidence ...

Estimated proportion of heritability explained by SNPs for various diseases.

Chuong B. Do (22097)
David A. Hinds (128908)
Uta Francke (41540)
Nicholas Eriksson (54415)

October 2012

<p> indicates the number of SNP markers used in the model being evaluated. All other values indicate...

Quantitative analyses and the test of heterogeneity of the hOGG1 Ser326Cys polymorphism on the ESCC risk in a recessive model.

Junjie Zhang (355622)
Jingshi Zhou (255166)
Ping Zhang (86495)
Weiping Wang (210831)
Shiheng Tao (138421)
Minghua Wang (37199)

June 2013

a<p>Sample size equals the total number of controls and cases;</p>b<p>Caculated by random model, oth...

The coefficients and associated 95% confidence intervals (CI) of the overdominant haplotype models for exploratory behaviour.

Hannah A. Edwards (814753)
Gabriela K. Hajduk (814754)
Gillian Durieux (814755)
Terry Burke (80052)
Hannah L. Dugdale (814756)

October 2015

<p>The models are relative to individuals with no copies of the haplotype, subordinate is relative t...

<i>IRGM</i> genotype associations.

Christopher D. Intemann (350218)
Thorsten Thye (264347)
Stefan Niemann (62805)
Edmund N. L. Browne (370581)
Margaret Amanua Chinbuah (350219)
Anthony Enimil (350221)
John Gyapong (81017)
Ivy Osei (264359)
Ellis Owusu-Dabo (264364)
Susanne Helm (238769)
Sabine Rüsch-Gerdes (62811)
Rolf D. Horstmann (220639)
Christian G. Meyer (111397)

February 2013

<p>GT, genotype; OR, odds ratio; CI, 95% confidence interval; OR<sub>add</sub>, estimates of an addi...

Frequencies of the <i>5-HTTLPR</i> alleles and polymorphisms of the included studies<sup>&</sup>.

Fernando Navarro-Mateu (426760)
Teresa Escámez (426761)
Karestan C. Koenen (155630)
Jordi Alonso (178939)
Julio Sánchez-Meca (426762)

June 2013

<p><i>S</i>, short allele; <i>L</i>, long allele; <i>S</i>' as <i>S</i> + <i>L<sub>G</sub></i>; and ...

Genotype frequencies of rs2237892 and its odds ratio for GDM.

Deng Ao (748870)
Hai-jun Wang (2826425)
Li-fang Wang (5663722)
Jie-yun Song (748871)
Hui-xia Yang (318790)
Yan Wang (15435)

June 2015

<p><sup><i>a</i></sup> Unadjusted odds ratio with 95% confidence interval (CI) and <i>P</i>-value wa...

Results from the single SNP association analyses (q<0.15).

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

<p>ADD; Additive model.</p><p>DOM; Dominant model.</p><p>A1; Tested allele (minor allele).</p><p>L95...

Genotype distributions at the five SNPs in the control and premature CAD groups.

Bin Chen (63682)
Fangyi Xie (787315)
Chengchun Tang (450947)
Genshan Ma (150359)
Li Wei (203949)
Zhong Chen (32985)

August 2015

<p>*Number of individuals with percentage in parentheses. CAD, coronary artery disease; OR, odds rat...

Odds ratios for each haplotype in the best-fitting model for each JIA subtypes, with 95% CI (grey band, with width proportional to haplotype frequency in controls).

Ebun Omoyinmi (125984)
Paola Forabosco (125986)
Raja Hamaoui (125988)
Annette Bryant (125990)
Anne Hinks (23498)
Simona Ursu (125994)
Lucy R. Wedderburn (125999)
Wendy Thomson (68038)
Cathryn M. Lewis (126002)
Patricia Woo (60657)

October 2012

<p>Odds ratios for each haplotype in the best-fitting model for each JIA subtypes, with 95% CI (grey...

Allele and genotype association analysis in female and male.

Nan Zhang (46264)
Yuehong Xu (610982)
Bo Zhang (6559)
Tianxiao Zhang (172364)
Haojie Yang (488653)
Bao Zhang (186933)
Zufei Feng (610983)
Dexing Zhong (610984)

August 2014

<p>OR: odds ratio; CI: confidence interval.</p><p>Significant p values are in italic bold. CI: confi...

Allele and genotype frequency of single SNP association analysis.

Nan Zhang (46264)
Yuehong Xu (610982)
Bo Zhang (6559)
Tianxiao Zhang (172364)
Haojie Yang (488653)
Bao Zhang (186933)
Zufei Feng (610983)
Dexing Zhong (610984)

August 2014

<p>OR: odds ratio; CI: confidence interval.</p>1<p>P values of the normal chi-square statistics from...

Odds-ratio for association between genotypes and traits that might be detected with a power of 0.8 at the specified minor allele frequency.

Albert O. Edwards (93062)
Sung J. Lee (93063)
Brooke L. Fridley (93064)
Nirubol Tosakulwong (93065)

February 2013

*<p>Abbreviations and definitions are given in <a href="http://www.plosone.org/article/info:doi/10.1...

Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.

Ya-Feng Li (157004)
Xiao-Ming Zhu (157007)
Fan Liu (27437)
Chuan-Shi Xiao (157014)
Yun-Fei Bian (157019)
Hong Li (20183)
Jun Cai (157029)
Rong-Shan Li (157036)
Xin-Chun Yang (157044)

June 2012

<p>Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.</p

Frequencies of estimated haplotypes and test statistics between responders and non-responders.

Ran Huo (165404)
Kefu Tang (165408)
Zhiyun Wei (165410)
Lu Shen (161789)
Yuyu Xiong (165413)
Xi Wu (128938)
Jiamin Niu (165420)
Xia Han (73012)
Zhengan Tian (165425)
Lun Yang (165433)
Guoyin Feng (165438)
Lin He (102807)
Shengying Qin (165450)

May 2012

<p>Only haplotypes with a frequency higher than 3% are listed.</p><p>OR: Odds ratio; CI: confidence ...

SNPs genotypes frequencies of the 4 SNPs in the 2 subtype groups.

Zhen Guan (510775)
Jianhua Wang (159545)
Jin Guo (102574)
Fang Wang (105926)
Xiuwei Wang (510776)
Guannan Li (510777)
Qiu Xie (510778)
Xu Han (141301)
Bo Niu (102579)
Ting Zhang (102583)

January 2014

<p>Abbreviations: SNP, single-nucleotide polymorphism; <i>OR</i>, odds ratio; <i>CI</i>, confidence ...

Estimated proportion of heritability explained by SNPs for various diseases.

Chuong B. Do (22097)
David A. Hinds (128908)
Uta Francke (41540)
Nicholas Eriksson (54415)

October 2012

<p> indicates the number of SNP markers used in the model being evaluated. All other values indicate...

Quantitative analyses and the test of heterogeneity of the hOGG1 Ser326Cys polymorphism on the ESCC risk in a recessive model.

Junjie Zhang (355622)
Jingshi Zhou (255166)
Ping Zhang (86495)
Weiping Wang (210831)
Shiheng Tao (138421)
Minghua Wang (37199)

June 2013

a<p>Sample size equals the total number of controls and cases;</p>b<p>Caculated by random model, oth...

The coefficients and associated 95% confidence intervals (CI) of the overdominant haplotype models for exploratory behaviour.

Hannah A. Edwards (814753)
Gabriela K. Hajduk (814754)
Gillian Durieux (814755)
Terry Burke (80052)
Hannah L. Dugdale (814756)

October 2015

<p>The models are relative to individuals with no copies of the haplotype, subordinate is relative t...

<i>IRGM</i> genotype associations.

Christopher D. Intemann (350218)
Thorsten Thye (264347)
Stefan Niemann (62805)
Edmund N. L. Browne (370581)
Margaret Amanua Chinbuah (350219)
Anthony Enimil (350221)
John Gyapong (81017)
Ivy Osei (264359)
Ellis Owusu-Dabo (264364)
Susanne Helm (238769)
Sabine Rüsch-Gerdes (62811)
Rolf D. Horstmann (220639)
Christian G. Meyer (111397)

February 2013

<p>GT, genotype; OR, odds ratio; CI, 95% confidence interval; OR<sub>add</sub>, estimates of an addi...

Frequencies of the <i>5-HTTLPR</i> alleles and polymorphisms of the included studies<sup>&</sup>.

Fernando Navarro-Mateu (426760)
Teresa Escámez (426761)
Karestan C. Koenen (155630)
Jordi Alonso (178939)
Julio Sánchez-Meca (426762)

June 2013

<p><i>S</i>, short allele; <i>L</i>, long allele; <i>S</i>' as <i>S</i> + <i>L<sub>G</sub></i>; and ...

Genotype frequencies of rs2237892 and its odds ratio for GDM.

Deng Ao (748870)
Hai-jun Wang (2826425)
Li-fang Wang (5663722)
Jie-yun Song (748871)
Hui-xia Yang (318790)
Yan Wang (15435)

June 2015

<p><sup><i>a</i></sup> Unadjusted odds ratio with 95% confidence interval (CI) and <i>P</i>-value wa...

Results from the single SNP association analyses (q<0.15).

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

<p>ADD; Additive model.</p><p>DOM; Dominant model.</p><p>A1; Tested allele (minor allele).</p><p>L95...

Genotype distributions at the five SNPs in the control and premature CAD groups.

Bin Chen (63682)
Fangyi Xie (787315)
Chengchun Tang (450947)
Genshan Ma (150359)
Li Wei (203949)
Zhong Chen (32985)

August 2015

<p>*Number of individuals with percentage in parentheses. CAD, coronary artery disease; OR, odds rat...

Odds ratios for each haplotype in the best-fitting model for each JIA subtypes, with 95% CI (grey band, with width proportional to haplotype frequency in controls).

Ebun Omoyinmi (125984)
Paola Forabosco (125986)
Raja Hamaoui (125988)
Annette Bryant (125990)
Anne Hinks (23498)
Simona Ursu (125994)
Lucy R. Wedderburn (125999)
Wendy Thomson (68038)
Cathryn M. Lewis (126002)
Patricia Woo (60657)

October 2012

<p>Odds ratios for each haplotype in the best-fitting model for each JIA subtypes, with 95% CI (grey...

Allele and genotype association analysis in female and male.

Nan Zhang (46264)
Yuehong Xu (610982)
Bo Zhang (6559)
Tianxiao Zhang (172364)
Haojie Yang (488653)
Bao Zhang (186933)
Zufei Feng (610983)
Dexing Zhong (610984)

August 2014

<p>OR: odds ratio; CI: confidence interval.</p><p>Significant p values are in italic bold. CI: confi...

Allele and genotype frequency of single SNP association analysis.

Nan Zhang (46264)
Yuehong Xu (610982)
Bo Zhang (6559)
Tianxiao Zhang (172364)
Haojie Yang (488653)
Bao Zhang (186933)
Zufei Feng (610983)
Dexing Zhong (610984)

August 2014

<p>OR: odds ratio; CI: confidence interval.</p>1<p>P values of the normal chi-square statistics from...

Odds-ratio for association between genotypes and traits that might be detected with a power of 0.8 at the specified minor allele frequency.

Albert O. Edwards (93062)
Sung J. Lee (93063)
Brooke L. Fridley (93064)
Nirubol Tosakulwong (93065)

February 2013

*<p>Abbreviations and definitions are given in <a href="http://www.plosone.org/article/info:doi/10.1...

Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.

Ya-Feng Li (157004)
Xiao-Ming Zhu (157007)
Fan Liu (27437)
Chuan-Shi Xiao (157014)
Yun-Fei Bian (157019)
Hong Li (20183)
Jun Cai (157029)
Rong-Shan Li (157036)
Xin-Chun Yang (157044)

June 2012

<p>Subgroup analyses for dominant model, recessive model and the allele contrast I versus D.</p

Frequencies of estimated haplotypes and test statistics between responders and non-responders.

Ran Huo (165404)
Kefu Tang (165408)
Zhiyun Wei (165410)
Lu Shen (161789)
Yuyu Xiong (165413)
Xi Wu (128938)
Jiamin Niu (165420)
Xia Han (73012)
Zhengan Tian (165425)
Lun Yang (165433)
Guoyin Feng (165438)
Lin He (102807)
Shengying Qin (165450)

May 2012

<p>Only haplotypes with a frequency higher than 3% are listed.</p><p>OR: Odds ratio; CI: confidence ...