<p>OccuPeak, MACS and CisGenome were used to call peaks for each of the two replicate p300 ChIP-seq experiments generated by the ENCODE consortium (GSE29184). <b>A</b>. Peaks are considered common (green) if they were identified in both replicates and singleton if they were only found in the current replicate (yellow and blue), as depicted in the UCSC genome browser example (<b>B</b>).</p
<p>(a) Distribution of expression levels of genes with (i) Common peaks; (ii) Common and Perm-seq-on...
Background: Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) can loca...
Graph-based representations are considered to be the future for reference genomes, as they allow int...
<div><p>ChIP-seq has become a major tool for the genome-wide identification of transcription factor ...
ChIP-seq experiments identify genome-wide profiles of DNA-binding molecules including transcription ...
<p><b>A</b>. UCSC genome browser snapshot showing tag counts (log scale) in 1 KB bins of two replica...
Background: Histone modifications play an important role in gene regulation. Their genomic locations...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Gene expression is the process of selectively reading genetic information and it describes a life-es...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Showing part of the graph-based reference genome for A. thaliana on chromosome 1, containing two SNP...
Chromatin immunoprecipitation coupled with high-throughput DNA sequencing (ChIP-Seq) is a powerful t...
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is an important tool for studying ge...
ChIP-Seq experiments combine the recently developed next-generation sequencing technology with the e...
Background: Finding peaks in ChIP-seq is an important process in biological inference. In some cases...
<p>(a) Distribution of expression levels of genes with (i) Common peaks; (ii) Common and Perm-seq-on...
Background: Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) can loca...
Graph-based representations are considered to be the future for reference genomes, as they allow int...
<div><p>ChIP-seq has become a major tool for the genome-wide identification of transcription factor ...
ChIP-seq experiments identify genome-wide profiles of DNA-binding molecules including transcription ...
<p><b>A</b>. UCSC genome browser snapshot showing tag counts (log scale) in 1 KB bins of two replica...
Background: Histone modifications play an important role in gene regulation. Their genomic locations...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Gene expression is the process of selectively reading genetic information and it describes a life-es...
Chromatin immunoprecipitation and sequencing (ChIP-seq) has been widely used to map DNA-binding prot...
Showing part of the graph-based reference genome for A. thaliana on chromosome 1, containing two SNP...
Chromatin immunoprecipitation coupled with high-throughput DNA sequencing (ChIP-Seq) is a powerful t...
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is an important tool for studying ge...
ChIP-Seq experiments combine the recently developed next-generation sequencing technology with the e...
Background: Finding peaks in ChIP-seq is an important process in biological inference. In some cases...
<p>(a) Distribution of expression levels of genes with (i) Common peaks; (ii) Common and Perm-seq-on...
Background: Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) can loca...
Graph-based representations are considered to be the future for reference genomes, as they allow int...