Global Protein-Metabolite-Gene-Drug Interaction Database (GPMGDID) construction.
- Marcelo Falsarella Carazzolle (581175)
- Lucas Miguel de Carvalho (581176)
- Hugo Henrique Slepicka (581177)
- Ramon Oliveira Vidal (571109)
- Gonçalo Amarante Guimarães Pereira (581178)
- Jörg Kobarg (228176)
- Gabriela Vaz Meirelles (581179)
Publication date
June 2014
DOIAbstract
<p>The UniProt Accession was chosen as the reference ID for the unification of the nine different databases used to construct GPMGDID: IntAct, DIP, MINT, BioGRID, HPRD, HMDB, YMDB, ECMDB and DrugBank databases. The interaction redundancies were eliminated by concatenating pairs of interactions with the source (PubMed IDs), generating an interaction pair ID given by UniProtID1_UniProtID2_PubMedID. The resultant database integrates several protein-metabolite-gene-drug interactions classified by source, methodology and organism.</p
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