Rarefaction plots of 16S rRNA gene sequences obtained from fecal samples.

Rarefaction curves from different skin sites from healthy dogs.

Aline Rodrigues Hoffmann (507237)
Adam P. Patterson (507238)
Alison Diesel (507239)
Sara D. Lawhon (94496)
Hoai Jaclyn Ly (507240)
Christine Elkins Stephenson (507241)
Joanne Mansell (507242)
Jörg M. Steiner (107366)
Scot E. Dowd (107356)
Thierry Olivry (181563)
Jan S. Suchodolski (107343)

January 2014

Rarefaction curves of 16S rRNA gene sequences obtained from different skin sites from healthy dog...

Quantitive analysis of 16 S rRNA, amoA, and nosZ gene in the sediments (computed in dry weight).

Yaohui Bai (161177)
Qing Shi (161182)
Donghui Wen (161185)
Zongxun Li (161190)
William A. Jefferson (161195)
Chuanping Feng (161198)
Xiaoyan Tang (161200)

May 2012

Black bars represent Caohai and grey bars represent Waihai. Error bars represent standard deviati...

Clustering scores for enterotypes in fecal samples using 16S rRNA data.

Omry Koren (103803)
Dan Knights (103804)
Antonio Gonzalez (2150521)
Levi Waldron (103807)
Nicola Segata (103809)
Rob Knight (11635)
Curtis Huttenhower (21159)
Ruth E. Ley (103812)

January 2013

(A) Prediction strength scores, (B) Caliński-Harabasz and (C) average silhouette scores calculate...

Rarefaction analysis of 16 S rRNA gene sequences obtained from canine fecal samples.

Jan S. Suchodolski (107343)
Melissa E. Markel (107347)
Jose F. Garcia-Mazcorro (107351)
Stefan Unterer (107353)
Romy M. Heilmann (107355)
Scot E. Dowd (107356)
Priyanka Kachroo (107357)
Ivan Ivanov (107359)
Yasushi Minamoto (107360)
Enricka M. Dillman (107363)
Jörg M. Steiner (107366)
Audrey K. Cook (107368)
Linda Toresson (107370)

December 2012

Lines represent the average of each group, while the error bars represent the standard deviations...

Rarefaction analysis of 16 S rRNA gene sequences obtained from canine duodenal mucosa samples.

Jan S. Suchodolski (107343)
Scot E. Dowd (107356)
Vicky Wilke (157711)
Jörg M. Steiner (107366)
Albert E. Jergens (157717)

June 2012

Lines represent the average of each group (blue = control dogs; red = dogs with idiopathic inflam...

Rarefraction analysis of V4 16S rRNA gene sequences obtained from fecal samples.

Hirotaka Igarashi (630791)
Shingo Maeda (154269)
Koichi Ohno (630792)
Ayako Horigome (630793)
Toshitaka Odamaki (630794)
Hajime Tsujimoto (130685)

September 2014

Results from dogs administered metronidazole (A) and prednisolone (B). Lines represent the averag...

Abundance (copies per g dry soil) of bacterial 16S rRNA (a) genes (b) transcripts under different treatments at four time points.

Rashi Gupta (778457)
V. S. Bisaria (778458)
Shilpi Sharma (778459)

July 2015

Error bars represent standard deviations (n = 3). Significantly different values (p < 0.05...

Rarefaction curves generated for 16 S rRNA gene sequences obtained from stool samples of infants and faecal samples of mothers.

Francesca Turroni (133919)
Clelia Peano (67208)
Daniel A. Pass (165160)
Elena Foroni (133927)
Marco Severgnini (165168)
Marcus J. Claesson (152740)
Colm Kerr (165174)
Jonathan Hourihane (165180)
Deirdre Murray (165185)
Fabio Fuligni (165190)
Miguel Gueimonde (165195)
Abelardo Margolles (133949)
Gianluca De Bellis (31121)
Paul W. O’Toole (152760)
Douwe van Sinderen (62590)
Julian R. Marchesi (165208)
Marco Ventura (133957)

May 2012

Panel a represents the rarefaction curves using the Chao index. Panel b displays rarefaction curv...

Rarefaction curves generated for 16S rRNA gene sequences and Principal Coordinate Analysis (PCoA) based on the phylotypes identified from different PCR primer sets as well as from different samples (stool samples of infants and fecal samples of mothers).

Christian Milani (133915)
Arancha Hevia (433634)
Elena Foroni (133927)
Sabrina Duranti (133929)
Francesca Turroni (133919)
Gabriele Andrea Lugli (433635)
Borja Sanchez (3465275)
Rebeca Martín (433636)
Miguel Gueimonde (165195)
Douwe van Sinderen (62590)
Abelardo Margolles (133949)
Marco Ventura (133957)

July 2013

Panels a and c display the rarefaction curves and the PCoA from stool samples of infants. Panels ...

MFEden of 14 human functional RNA families.

Edoardo Trotta (184996)

November 2014

Bar plot showing the mean MFEden of 14 human functional RNA families (grey bars) compared with th...

Rarefaction analysis of bacterial SSU rRNA gene sequences.

Amy Apprill (543222)
Jooke Robbins (3247857)
A. Murat Eren (199779)
Adam A. Pack (310141)
Julie Reveillaud (225126)
David Mattila (366466)
Michael Moore (33431)
Misty Niemeyer (499625)
Kathleen M. T. Moore (543223)
Tracy J. Mincer (543224)

March 2014

This analysis represents data subsampled at 3,662 sequences per sample. Samples with OTU richness...

16S rRNA gene copy number variation after qPCR expressed as genes/μl.

Alex Gobbi (6580508)
Rui G. Santini (6580511)
Elisa Filippi (590800)
Lea Ellegaard-Jensen (1687039)
Carsten S. Jacobsen (2288578)
Lars H. Hansen (129876)

April 2019

A comparison between three commercial products with and without G2. Values shown are averages of n =...

Average percentage of phyla identified in control dogs and dogs with IBD.

Jan S. Suchodolski (107343)
Scot E. Dowd (107356)
Vicky Wilke (157711)
Jörg M. Steiner (107366)
Albert E. Jergens (157717)

June 2012

Data represent the percentage of obtained total 16 S rRNA gene sequences. Error bars represent st...

Rarefaction curves at a genetic distance of 3% for each sample (T1–T10).

Cátia Pinto (509999)
Diogo Pinho (504042)
Susana Sousa (181705)
Miguel Pinheiro (8053)
Conceição Egas (236825)
Ana C. Gomes (181711)

January 2014

D2 (a) and ITS2 (b) sequences both from the analysis of 26S rRNA and ITS regions of eukaryotic po...

Total 16S rRNA gene copy number normalized to ng DNA.

Mark H. Loria (14329010)
James S. Griffin (3906106)
George F. Wells (2238850)
Kurt R. Rhoads (2443453)

January 2023

Indication of bacterial DNA to total DNA ratio for biological triplicate reactors at pH 9 and pH 7.5...

Rarefaction curves from different skin sites from healthy dogs.

Aline Rodrigues Hoffmann (507237)
Adam P. Patterson (507238)
Alison Diesel (507239)
Sara D. Lawhon (94496)
Hoai Jaclyn Ly (507240)
Christine Elkins Stephenson (507241)
Joanne Mansell (507242)
Jörg M. Steiner (107366)
Scot E. Dowd (107356)
Thierry Olivry (181563)
Jan S. Suchodolski (107343)

January 2014

Rarefaction curves of 16S rRNA gene sequences obtained from different skin sites from healthy dog...

Quantitive analysis of 16 S rRNA, amoA, and nosZ gene in the sediments (computed in dry weight).

Yaohui Bai (161177)
Qing Shi (161182)
Donghui Wen (161185)
Zongxun Li (161190)
William A. Jefferson (161195)
Chuanping Feng (161198)
Xiaoyan Tang (161200)

May 2012

Black bars represent Caohai and grey bars represent Waihai. Error bars represent standard deviati...

Clustering scores for enterotypes in fecal samples using 16S rRNA data.

Omry Koren (103803)
Dan Knights (103804)
Antonio Gonzalez (2150521)
Levi Waldron (103807)
Nicola Segata (103809)
Rob Knight (11635)
Curtis Huttenhower (21159)
Ruth E. Ley (103812)

January 2013

(A) Prediction strength scores, (B) Caliński-Harabasz and (C) average silhouette scores calculate...

Rarefaction analysis of 16 S rRNA gene sequences obtained from canine fecal samples.

Jan S. Suchodolski (107343)
Melissa E. Markel (107347)
Jose F. Garcia-Mazcorro (107351)
Stefan Unterer (107353)
Romy M. Heilmann (107355)
Scot E. Dowd (107356)
Priyanka Kachroo (107357)
Ivan Ivanov (107359)
Yasushi Minamoto (107360)
Enricka M. Dillman (107363)
Jörg M. Steiner (107366)
Audrey K. Cook (107368)
Linda Toresson (107370)

December 2012

Lines represent the average of each group, while the error bars represent the standard deviations...

Rarefaction analysis of 16 S rRNA gene sequences obtained from canine duodenal mucosa samples.

Jan S. Suchodolski (107343)
Scot E. Dowd (107356)
Vicky Wilke (157711)
Jörg M. Steiner (107366)
Albert E. Jergens (157717)

June 2012

Lines represent the average of each group (blue = control dogs; red = dogs with idiopathic inflam...

Rarefraction analysis of V4 16S rRNA gene sequences obtained from fecal samples.

Hirotaka Igarashi (630791)
Shingo Maeda (154269)
Koichi Ohno (630792)
Ayako Horigome (630793)
Toshitaka Odamaki (630794)
Hajime Tsujimoto (130685)

September 2014

Results from dogs administered metronidazole (A) and prednisolone (B). Lines represent the averag...

Abundance (copies per g dry soil) of bacterial 16S rRNA (a) genes (b) transcripts under different treatments at four time points.

Rashi Gupta (778457)
V. S. Bisaria (778458)
Shilpi Sharma (778459)

July 2015

Error bars represent standard deviations (n = 3). Significantly different values (p < 0.05...

Rarefaction curves generated for 16 S rRNA gene sequences obtained from stool samples of infants and faecal samples of mothers.

Francesca Turroni (133919)
Clelia Peano (67208)
Daniel A. Pass (165160)
Elena Foroni (133927)
Marco Severgnini (165168)
Marcus J. Claesson (152740)
Colm Kerr (165174)
Jonathan Hourihane (165180)
Deirdre Murray (165185)
Fabio Fuligni (165190)
Miguel Gueimonde (165195)
Abelardo Margolles (133949)
Gianluca De Bellis (31121)
Paul W. O’Toole (152760)
Douwe van Sinderen (62590)
Julian R. Marchesi (165208)
Marco Ventura (133957)

May 2012

Panel a represents the rarefaction curves using the Chao index. Panel b displays rarefaction curv...

Rarefaction curves generated for 16S rRNA gene sequences and Principal Coordinate Analysis (PCoA) based on the phylotypes identified from different PCR primer sets as well as from different samples (stool samples of infants and fecal samples of mothers).

Christian Milani (133915)
Arancha Hevia (433634)
Elena Foroni (133927)
Sabrina Duranti (133929)
Francesca Turroni (133919)
Gabriele Andrea Lugli (433635)
Borja Sanchez (3465275)
Rebeca Martín (433636)
Miguel Gueimonde (165195)
Douwe van Sinderen (62590)
Abelardo Margolles (133949)
Marco Ventura (133957)

July 2013

Panels a and c display the rarefaction curves and the PCoA from stool samples of infants. Panels ...

MFEden of 14 human functional RNA families.

Edoardo Trotta (184996)

November 2014

Bar plot showing the mean MFEden of 14 human functional RNA families (grey bars) compared with th...

Rarefaction analysis of bacterial SSU rRNA gene sequences.

Amy Apprill (543222)
Jooke Robbins (3247857)
A. Murat Eren (199779)
Adam A. Pack (310141)
Julie Reveillaud (225126)
David Mattila (366466)
Michael Moore (33431)
Misty Niemeyer (499625)
Kathleen M. T. Moore (543223)
Tracy J. Mincer (543224)

March 2014

This analysis represents data subsampled at 3,662 sequences per sample. Samples with OTU richness...

16S rRNA gene copy number variation after qPCR expressed as genes/μl.

Alex Gobbi (6580508)
Rui G. Santini (6580511)
Elisa Filippi (590800)
Lea Ellegaard-Jensen (1687039)
Carsten S. Jacobsen (2288578)
Lars H. Hansen (129876)

April 2019

A comparison between three commercial products with and without G2. Values shown are averages of n =...

Average percentage of phyla identified in control dogs and dogs with IBD.

Jan S. Suchodolski (107343)
Scot E. Dowd (107356)
Vicky Wilke (157711)
Jörg M. Steiner (107366)
Albert E. Jergens (157717)

June 2012

Data represent the percentage of obtained total 16 S rRNA gene sequences. Error bars represent st...

Rarefaction curves at a genetic distance of 3% for each sample (T1–T10).

Cátia Pinto (509999)
Diogo Pinho (504042)
Susana Sousa (181705)
Miguel Pinheiro (8053)
Conceição Egas (236825)
Ana C. Gomes (181711)

January 2014

D2 (a) and ITS2 (b) sequences both from the analysis of 26S rRNA and ITS regions of eukaryotic po...

Total 16S rRNA gene copy number normalized to ng DNA.

Mark H. Loria (14329010)
James S. Griffin (3906106)
George F. Wells (2238850)
Kurt R. Rhoads (2443453)

January 2023

Indication of bacterial DNA to total DNA ratio for biological triplicate reactors at pH 9 and pH 7.5...

Rarefaction curves from different skin sites from healthy dogs.

Aline Rodrigues Hoffmann (507237)
Adam P. Patterson (507238)
Alison Diesel (507239)
Sara D. Lawhon (94496)
Hoai Jaclyn Ly (507240)
Christine Elkins Stephenson (507241)
Joanne Mansell (507242)
Jörg M. Steiner (107366)
Scot E. Dowd (107356)
Thierry Olivry (181563)
Jan S. Suchodolski (107343)

January 2014

Rarefaction curves of 16S rRNA gene sequences obtained from different skin sites from healthy dog...

Quantitive analysis of 16 S rRNA, amoA, and nosZ gene in the sediments (computed in dry weight).

Yaohui Bai (161177)
Qing Shi (161182)
Donghui Wen (161185)
Zongxun Li (161190)
William A. Jefferson (161195)
Chuanping Feng (161198)
Xiaoyan Tang (161200)

May 2012

Black bars represent Caohai and grey bars represent Waihai. Error bars represent standard deviati...

Clustering scores for enterotypes in fecal samples using 16S rRNA data.

Omry Koren (103803)
Dan Knights (103804)
Antonio Gonzalez (2150521)
Levi Waldron (103807)
Nicola Segata (103809)
Rob Knight (11635)
Curtis Huttenhower (21159)
Ruth E. Ley (103812)

January 2013

(A) Prediction strength scores, (B) Caliński-Harabasz and (C) average silhouette scores calculate...

Rarefaction plots of 16S rRNA gene sequences obtained from fecal samples.

Abstract

Extracted data

Rarefaction plots of 16S rRNA gene sequences obtained from fecal samples.

Abstract

Extracted data

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