<p>The complete list of sample ID, SNPs, miRNAs, and gene targets with more than one SNP is given in the <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0101509#pone.0101509.s003" target="_blank">Table S3</a>. *The expected numbers were calculated using 1000 permutations.</p
<p>Number of SNPs is given for each of the chromosomes shown, according to data in dbSNP, HapMap, or...
a<p>HWE deviation p value.</p>b<p><i>p</i> value obtained from 10,000 phenotype-label swapping permu...
<p>A) Number of mutated samples by gene according to the described mutation filtering protocol (<a h...
<p>Each cell count is the number of alleles in the sample collapsed from <a href="http://www.plosone...
<p>Common haplotypes and estimated haplotype frequencies as determined using Haploview across the re...
<p>This figure displays the number of SNPs called for each of the 8 methods used. The proportion of ...
<p>N, the number of subjects.</p>*<p>1000 Genomes. <a href="http://browser.1000genomes.org/Homo_sapi...
<p>The number in a cell means the number of SNPs with significantly different frequencies (with mult...
<p>A.) Pairwise F<sub>ST</sub> of polymorphic sites. Each patient sample was treated as a population...
<p>Each of these SNPs is categorized according to the minor allele frequency (MAF) as rare (0%< MAF ...
The top part of the figure shows the % match (Y axis) between the expected HLA diversity at differen...
<p>This figure shows expected number of SNP sites with overlapping data for two individuals for diff...
a<p>Individuals from this breed also included in <a href="http://www.plosone.org/article/info:doi/10...
<p>Distribution of HL for the RS1 and RS2 samples used by Liu et al. <a href="http://www.plosone.org...
<p>Number of haplotypes for each sample from the concatenated data (12S, 16S and COI genes).</p
<p>Number of SNPs is given for each of the chromosomes shown, according to data in dbSNP, HapMap, or...
a<p>HWE deviation p value.</p>b<p><i>p</i> value obtained from 10,000 phenotype-label swapping permu...
<p>A) Number of mutated samples by gene according to the described mutation filtering protocol (<a h...
<p>Each cell count is the number of alleles in the sample collapsed from <a href="http://www.plosone...
<p>Common haplotypes and estimated haplotype frequencies as determined using Haploview across the re...
<p>This figure displays the number of SNPs called for each of the 8 methods used. The proportion of ...
<p>N, the number of subjects.</p>*<p>1000 Genomes. <a href="http://browser.1000genomes.org/Homo_sapi...
<p>The number in a cell means the number of SNPs with significantly different frequencies (with mult...
<p>A.) Pairwise F<sub>ST</sub> of polymorphic sites. Each patient sample was treated as a population...
<p>Each of these SNPs is categorized according to the minor allele frequency (MAF) as rare (0%< MAF ...
The top part of the figure shows the % match (Y axis) between the expected HLA diversity at differen...
<p>This figure shows expected number of SNP sites with overlapping data for two individuals for diff...
a<p>Individuals from this breed also included in <a href="http://www.plosone.org/article/info:doi/10...
<p>Distribution of HL for the RS1 and RS2 samples used by Liu et al. <a href="http://www.plosone.org...
<p>Number of haplotypes for each sample from the concatenated data (12S, 16S and COI genes).</p
<p>Number of SNPs is given for each of the chromosomes shown, according to data in dbSNP, HapMap, or...
a<p>HWE deviation p value.</p>b<p><i>p</i> value obtained from 10,000 phenotype-label swapping permu...
<p>A) Number of mutated samples by gene according to the described mutation filtering protocol (<a h...