<p>(A) Cumulative frequency distributions for the observed and randomly expected within-gene rank correlations between the evolutionary conservation of the encoded amino acid of a codon and its elongation speed. KS test, Kolmogorov–Smirnov test of the equality of the two distributions. Only 1,590 genes are used here because correlation cannot be calculated for the other 254 genes due to the lack of variation (or having too few sites with necessary data) in either evolutionary conservation or elongation speed. (B) Cumulative frequency distributions for the observed and randomly expected odds ratio <i>OR</i><sub>1</sub>, which measures the enrichment of slow-elongation codons at evolutionary conserved residues within a gene. (C) Combined <i>O...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
<p>For all interacting pairs of proteins for which we have information about both, we compute the pr...
It has been suggested that volatility, the proportion of mutations which change an amino acid, can b...
<p>(A) Average elongation speed for a gene decreases as the mean evolutionary conservation of the ge...
Gene codon optimization may be impaired by the misinterpretation of frequency and optimality of codo...
<p>(A) Synonymous codon usage does not predict elongation speed. For each amino acid, <i>OR</i><sub>...
Protein abundance is crucial for the majority of genetically regulated cell functions to act properl...
Rates of evolution differ widely among proteins, but the causes and consequences of such differences...
The rate of protein evolution varies more than 1000-fold and, for the past 30 years, it was thought ...
AbstractWe analyzed the interrelation between the efficiency of a gene expression and the nucleotide...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Codon usage bias (CUB) is the well known phenomenon that the frequency of synonymous codons is unequ...
Improved computational modeling of protein translation rates, including better prediction of where t...
Abstract: Many different selective effects on DNA and proteins infl uence the frequency of codons an...
<p>(A) Relative uses of synonymous codons in the transcriptomes of seven model eukaryotes are compar...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
<p>For all interacting pairs of proteins for which we have information about both, we compute the pr...
It has been suggested that volatility, the proportion of mutations which change an amino acid, can b...
<p>(A) Average elongation speed for a gene decreases as the mean evolutionary conservation of the ge...
Gene codon optimization may be impaired by the misinterpretation of frequency and optimality of codo...
<p>(A) Synonymous codon usage does not predict elongation speed. For each amino acid, <i>OR</i><sub>...
Protein abundance is crucial for the majority of genetically regulated cell functions to act properl...
Rates of evolution differ widely among proteins, but the causes and consequences of such differences...
The rate of protein evolution varies more than 1000-fold and, for the past 30 years, it was thought ...
AbstractWe analyzed the interrelation between the efficiency of a gene expression and the nucleotide...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Codon usage bias (CUB) is the well known phenomenon that the frequency of synonymous codons is unequ...
Improved computational modeling of protein translation rates, including better prediction of where t...
Abstract: Many different selective effects on DNA and proteins infl uence the frequency of codons an...
<p>(A) Relative uses of synonymous codons in the transcriptomes of seven model eukaryotes are compar...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
<p>For all interacting pairs of proteins for which we have information about both, we compute the pr...
It has been suggested that volatility, the proportion of mutations which change an amino acid, can b...