<p>Each group was defined by the dendrogram analysis based upon ThetaYC index (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0102649#pone-0102649-g002" target="_blank">figure 2</a>). Alpha-diversity was calculated by the non-parametric index of Shannon.</p
<p>Rarefaction plots for samples from trial 1 (red), trial 2 (green) and trial 3 (blue), based on Ch...
<p>The two libraries significantly correlated in the pattern of diversity across-species for all thr...
<p>Given are Shannon entropy and the resulting effective species numbers - Shannon diversity sensu J...
<p>Alpha diversity was compared between groups by measuring different metrics: Observed species (a) ...
<p>Rarefraction curve for <b>A.</b> chao1, <b>B.</b> observed species, <b>C.</b> PD whole tree, and ...
<p>regression model showing the increase in individual diversity indices over time from 3 to 24 mont...
<p>Species diversity is represented on a local scale (for all samples) at a 99% similarity level (pa...
The observed OTUs (1a,1b) and the Shannon index (1c, 1d) in the sample groups of CG1st, CG2nd, CG3rd...
Jost (Ecology, 88:2427–2439, 2007) recently showed that the Shannon diversity is the only standard d...
<p>NPH—Non-pregnant Heifers, PH—Pregnant Heifers, NPC—Non-pregnant Cows, PC—Pregnant Cows. Different...
<p>Alpha diversity indexes were calculated in QIIME from rarefied samples using the Chao1 index and ...
A desirable property of a diversity index is strict concavity. This implies that the pooled diversit...
<p>The Shannon index (left panel) and Chao1 index (right panel) were computed for all 121 subjects. ...
<p>A theoretical rank abundance curve (a PDF) is overlayed with its CDF (black) as a “Pareto chart”....
<p>Overall Shannon diversity measures for all samples in the study, P<0.05 for the first three group...
<p>Rarefaction plots for samples from trial 1 (red), trial 2 (green) and trial 3 (blue), based on Ch...
<p>The two libraries significantly correlated in the pattern of diversity across-species for all thr...
<p>Given are Shannon entropy and the resulting effective species numbers - Shannon diversity sensu J...
<p>Alpha diversity was compared between groups by measuring different metrics: Observed species (a) ...
<p>Rarefraction curve for <b>A.</b> chao1, <b>B.</b> observed species, <b>C.</b> PD whole tree, and ...
<p>regression model showing the increase in individual diversity indices over time from 3 to 24 mont...
<p>Species diversity is represented on a local scale (for all samples) at a 99% similarity level (pa...
The observed OTUs (1a,1b) and the Shannon index (1c, 1d) in the sample groups of CG1st, CG2nd, CG3rd...
Jost (Ecology, 88:2427–2439, 2007) recently showed that the Shannon diversity is the only standard d...
<p>NPH—Non-pregnant Heifers, PH—Pregnant Heifers, NPC—Non-pregnant Cows, PC—Pregnant Cows. Different...
<p>Alpha diversity indexes were calculated in QIIME from rarefied samples using the Chao1 index and ...
A desirable property of a diversity index is strict concavity. This implies that the pooled diversit...
<p>The Shannon index (left panel) and Chao1 index (right panel) were computed for all 121 subjects. ...
<p>A theoretical rank abundance curve (a PDF) is overlayed with its CDF (black) as a “Pareto chart”....
<p>Overall Shannon diversity measures for all samples in the study, P<0.05 for the first three group...
<p>Rarefaction plots for samples from trial 1 (red), trial 2 (green) and trial 3 (blue), based on Ch...
<p>The two libraries significantly correlated in the pattern of diversity across-species for all thr...
<p>Given are Shannon entropy and the resulting effective species numbers - Shannon diversity sensu J...
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