<p>Amino acid covariances within alignments of the HCV cirrhotic (left) and HCC (right) sequences were graphed with the covarying positions (nodes) represented as circles and the covariances between the positions (edges) as lines. The size of the nodes is proportional to the number of edges that they contact. Yellow nodes are within structural proteins and green nodes are in non-structural proteins. The amino acid residue position numbered relative to the HCV polyprotein is indicated in the larger nodes.</p
<p>The red nodes represent the amino acid residues from B-chain and the yellow nodes represent the a...
<p><b>Bold</b> indicates positions unique to the HCC or cirrhotic sequence alignments compared to al...
<p>The color scale is represented on the right ranging from red to blue: highly positive correlation...
1<p>Sequences obtained from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.01...
Amino acid alignment of all our HCV sequences in comparison with the HCV prototype strain H77 indica...
<p>The yellow node (V1, V2) are HCV proteins. The target genes (blue nodes, T1, T2 and T3) were the ...
<p>The orange circles represent the HCV proteins. The blue circles represent the human proteins. The...
<p>Positions where the distribution of amino acids differ in HCC and cirrhotic control sequences.</p
<p>Multiple alignment of NS4B amino acid (aa) 1–70 sequences from representative HCV strains of conf...
<p>Each line represents the core protein sequence of a strain (highlighted in gray) or a core protei...
<p>A. Consensus E2 amino-acid sequences were determined in 17 HCV-infected subjects and in the HCV-1...
<p>The top ranked 1,500 proteins by network proximity score <i>s<sub>i</sub></i> (on the right of th...
<p>Different views of the corresponding RIN are displayed. The edges are colored with respect to the...
<p>Coloured nodes represent the portions of the pathways mostly involved in cirrhosis. The colour of...
<p>(A) PPI network of HCC significant proteins. This network consists of 14713 nodes and 144925 edge...
<p>The red nodes represent the amino acid residues from B-chain and the yellow nodes represent the a...
<p><b>Bold</b> indicates positions unique to the HCC or cirrhotic sequence alignments compared to al...
<p>The color scale is represented on the right ranging from red to blue: highly positive correlation...
1<p>Sequences obtained from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.01...
Amino acid alignment of all our HCV sequences in comparison with the HCV prototype strain H77 indica...
<p>The yellow node (V1, V2) are HCV proteins. The target genes (blue nodes, T1, T2 and T3) were the ...
<p>The orange circles represent the HCV proteins. The blue circles represent the human proteins. The...
<p>Positions where the distribution of amino acids differ in HCC and cirrhotic control sequences.</p
<p>Multiple alignment of NS4B amino acid (aa) 1–70 sequences from representative HCV strains of conf...
<p>Each line represents the core protein sequence of a strain (highlighted in gray) or a core protei...
<p>A. Consensus E2 amino-acid sequences were determined in 17 HCV-infected subjects and in the HCV-1...
<p>The top ranked 1,500 proteins by network proximity score <i>s<sub>i</sub></i> (on the right of th...
<p>Different views of the corresponding RIN are displayed. The edges are colored with respect to the...
<p>Coloured nodes represent the portions of the pathways mostly involved in cirrhosis. The colour of...
<p>(A) PPI network of HCC significant proteins. This network consists of 14713 nodes and 144925 edge...
<p>The red nodes represent the amino acid residues from B-chain and the yellow nodes represent the a...
<p><b>Bold</b> indicates positions unique to the HCC or cirrhotic sequence alignments compared to al...
<p>The color scale is represented on the right ranging from red to blue: highly positive correlation...