Maximum clade credibility tree of rabies viruses based on complete nucleoprotein (N) gene sequences.

James A. Ellison (492310)
Amy T. Gilbert (469350)
Sergio Recuenco (469346)
David Moran (488539)
Danilo A. Alvarez (607079)
Natalia Kuzmina (607080)
Daniel L. Garcia (607081)
Leonard F. Peruski (300223)
Mary T. Mendonça (405277)
Kim A. Lindblade (265496)
Charles E. Rupprecht (156842)

Publication date

July 2014

DOI

10.1371/journal.pntd.0003070.g002

Abstract

Posterior probabilities are shown for key nodes. Mexico dog RABV was used as an out-group. Novel sequences generated from the CNS material of two rabid vampire bats in this study are shown in red.</p

Extracted data

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Maximum clade credibility tree of rabies viruses based on complete nucleoprotein (N) gene sequences.

James A. Ellison (492310)
Amy T. Gilbert (469350)
Sergio Recuenco (469346)
David Moran (488539)
Danilo A. Alvarez (607079)
Natalia Kuzmina (607080)
Daniel L. Garcia (607081)
Leonard F. Peruski (300223)
Mary T. Mendonça (405277)
Kim A. Lindblade (265496)
Charles E. Rupprecht (156842)

Open link

Publication date

July 2014

DOI

10.1371/journal.pntd.0003070.g002

Abstract

Extracted data

Topics

MexicoPerson

dogMammal

Mihaela Anca Dascalu (16502885)
Evelyne Picard-Meyer (331154)
Emmanuelle Robardet (331148)
Alexandre Servat (572154)
Serghei Arseniev (16502888)
Oxana Groza (16502891)
Nicolae Starciuc (16502894)
Vlad Vuta (16502897)
Florica Barbuceanu (16492562)
Oana Irina Tanase (16502900)
Florentina Daraban Bocaneti (16502903)
Helene Quenault (9754690)
Edouard Hirchaud (204322)
Yannick Blanchard (577101)
Elena Velescu (8166210)
Florence Cliquet (331147)

July 2023

For Moldova, domestic animals (n = 6) are shown with purple triangles. For north-eastern Romania, do...

Maximum likelihood phylogenetic tree based on the complete rabies virus nucleoprotein gene.

Ye Liu (296340)
He-Ping Zhang (3094842)
Shou-Feng Zhang (1604875)
Jin-Xiang Wang (499263)
Hai-Ning Zhou (3094839)
Fei Zhang (85787)
Yu-Mei Wang (424902)
Long Ma (133810)
Nan Li (155066)
Rong-Liang Hu (3094836)

September 2016

The tree is rooted with Irkut virus isolate JX442979, European bat lyssavirus type 1 and 2 isolat...

Maximum clade credibility tree of the cytoplasmic domain of the G-L intergenic region of RABV sequences originating from Zimbabwe and selected neighbouring countries (Zambia and Mozambique).

Andre Coetzer (634423)
Lambert Gwenhure (6195428)
Pious Makaya (6195431)
Wanda Markotter (392368)
Louis Nel (3706213)

January 2019

The scale bar depicts nucleotide substitutions per site (mean: 2,4E-4 substitutions/site) and all br...

Phylogenetic tree.

Julie Baby (773881)
Reeta Subramaniam Mani (773882)
Swapna Susan Abraham (773883)
Asha T. Thankappan (773884)
Prasad Madhavan Pillai (773885)
Ashwini Manoor Anand (773886)
Shampur Narayan Madhusudana (773887)
Jayachandran Ramachandran (773888)
Sachin Sreekumar (773889)

July 2015

Maximum likelihood phylogenetic tree was constructed with MEGA 5 software using nucleoprotein gen...

Time-line evolutionary analysis of rabies virus.

Kamruddin Ahmed (641913)
Phouvong Phommachanh (715423)
Phengphet Vorachith (715424)
Takashi Matsumoto (5861)
Pheophet Lamaningao (715425)
Daisuke Mori (458964)
Minako Takaki (715426)
Bounlom Douangngeun (715427)
Bounkhouang Khambounheuang (715428)
Akira Nishizono (464145)

March 2015

Bayesian maximum credibility tree representing the genealogy of rabies virus obtained by analyzin...

Maximum clade credibility tree from Bayesian reconstruction of 171 RABV partial nucleoprotein sequences, using a TN93 +G+I model of evolution with a strict molecular clock and Bayesian skyline prior, for 100 million iterations in BEAST (v1.8.0).

Daniel L. Horton (225460)
Lorraine M. McElhinney (370256)
Conrad M. Freuling (370255)
Denise A. Marston (370257)
Ashley C. Banyard (225470)
Hooman Goharrriz (712944)
Emma Wise (383378)
Andrew C. Breed (185310)
Greg Saturday (712945)
Jolanta Kolodziejek (210653)
Erika Zilahi (712946)
Muhannad F. Al-Kobaisi (712947)
Norbert Nowotny (210654)
Thomas Mueller (33067)
Anthony R. Fooks (44966)

March 2015

The maximum clade credibility tree was chosen using TreeAnnotator(v1.8.0) and visualised using Fi...

Map (a) and maximum clade credibility tree (b) of SCSK G gene sequences used in the study.

Natalia A. Kuzmina (156827)
Philippe Lemey (30422)
Ivan V. Kuzmin (156798)
Bonny C. Mayes (492309)
James A. Ellison (492310)
Lillian A. Orciari (156809)
Dillon Hightower (492311)
Steven T. Taylor (492312)
Charles E. Rupprecht (156842)

December 2013

Posterior probabilities are shown for key nodes, and timescale is present at the bottom. To show ...

Maximum clade credibility tree using host species as a discrete trait, using only sequences from viruses detected in wild canids or dogs.

Daniel L. Horton (225460)
Lorraine M. McElhinney (370256)
Conrad M. Freuling (370255)
Denise A. Marston (370257)
Ashley C. Banyard (225470)
Hooman Goharrriz (712944)
Emma Wise (383378)
Andrew C. Breed (185310)
Greg Saturday (712945)
Jolanta Kolodziejek (210653)
Erika Zilahi (712946)
Muhannad F. Al-Kobaisi (712947)
Norbert Nowotny (210654)
Thomas Mueller (33067)
Anthony R. Fooks (44966)

March 2015

Branches are coloured by the most probable host species (dogs or wildlife) of the progeny node, w...

Phylogenetic tree of complete and partial G genes from 235 Philippine rabies virus strains.

Mariko Saito (339975)
Hitoshi Oshitani (178316)
Jun Ryan C. Orbina (399416)
Kentaro Tohma (399417)
Alice S. de Guzman (399418)
Taro Kamigaki (178287)
Catalino S. Demetria (399419)
Daria L. Manalo (377565)
Akira Noguchi (399420)
Satoshi Inoue (221875)
Beatriz P. Quiambao (377607)

April 2013

The phylogenetic tree of 233 complete (1572 nt) and two partial (1549 nt) G genes was constructed...

Comparison between phylogenetic trees of rabies virus N and G genes.

Mariko Saito (339975)
Hitoshi Oshitani (178316)
Jun Ryan C. Orbina (399416)
Kentaro Tohma (399417)
Alice S. de Guzman (399418)
Taro Kamigaki (178287)
Catalino S. Demetria (399419)
Daria L. Manalo (377565)
Akira Noguchi (399420)
Satoshi Inoue (221875)
Beatriz P. Quiambao (377607)

April 2013

Comparison of rabies virus phylogenetic trees for the (A) partial N gene (1124 nt) and the (B) co...

Estimated phylogenetic relationship of Chinese isolates.

Zhenyang Guo (167627)
Xiaoyan Tao (167632)
Cuiping Yin (278386)
Na Han (167625)
Jinning Yu (167622)
Hao Li (31608)
Haizhou Liu (167629)
Wei Fang (116739)
James Adams (167630)
Jun Wang (5906)
Guodong Liang (167635)
Qing Tang (167623)
Simon Rayner (117650)

January 2013

Maximum clade credibility (MCC) tree of dataset 6 using 232 full length N gene sequences of Chine...

Phylogenetic tree of rabies virus full-length N gene (1353 bp), for both Moldova and north-eastern Romania, generated by PhyML and Seaview softwares.

Mihaela Anca Dascalu (16502885)
Evelyne Picard-Meyer (331154)
Emmanuelle Robardet (331148)
Alexandre Servat (572154)
Serghei Arseniev (16502888)
Oxana Groza (16502891)
Nicolae Starciuc (16502894)
Vlad Vuta (16502897)
Florica Barbuceanu (16492562)
Oana Irina Tanase (16502900)
Florentina Daraban Bocaneti (16502903)
Helene Quenault (9754690)
Edouard Hirchaud (204322)
Yannick Blanchard (577101)
Elena Velescu (8166210)
Florence Cliquet (331147)

July 2023

For Moldova, domestic animals (n = 13) are shown in purple triangles and the wild animal (n = 1) in ...

The maximum clade credibility tree was estimated by Bayesian analysis of nucleoprotein gene sequences with ∼450 bp of 466 measles virus strains.

Chengguo Wei (128335)
Jingwei Shi (128338)
Bin Liu (5899)
Yue Shi (128342)
Jingtong Zheng (128345)
Guangyu Xu (128347)
Jinshu Ma (128350)
Guoqing Wang (128352)
Fan Li (49953)

October 2012

The posterior probabilities of the key nodes are depicted above the respective nodes. Samples iso...

Phylogenetic tree of rabies virus whole genome for Moldova and north-eastern Romania, generated by PhyML and Seaview software.

Mihaela Anca Dascalu (16502885)
Evelyne Picard-Meyer (331154)
Emmanuelle Robardet (331148)
Alexandre Servat (572154)
Serghei Arseniev (16502888)
Oxana Groza (16502891)
Nicolae Starciuc (16502894)
Vlad Vuta (16502897)
Florica Barbuceanu (16492562)
Oana Irina Tanase (16502900)
Florentina Daraban Bocaneti (16502903)
Helene Quenault (9754690)
Edouard Hirchaud (204322)
Yannick Blanchard (577101)
Elena Velescu (8166210)
Florence Cliquet (331147)

July 2023

For Moldova, domestic animals (n = 6) are shown with purple triangles. For north-eastern Romania, do...

Maximum likelihood phylogenetic tree based on the complete rabies virus nucleoprotein gene.

Ye Liu (296340)
He-Ping Zhang (3094842)
Shou-Feng Zhang (1604875)
Jin-Xiang Wang (499263)
Hai-Ning Zhou (3094839)
Fei Zhang (85787)
Yu-Mei Wang (424902)
Long Ma (133810)
Nan Li (155066)
Rong-Liang Hu (3094836)

September 2016

The tree is rooted with Irkut virus isolate JX442979, European bat lyssavirus type 1 and 2 isolat...

Maximum clade credibility tree of the cytoplasmic domain of the G-L intergenic region of RABV sequences originating from Zimbabwe and selected neighbouring countries (Zambia and Mozambique).

Andre Coetzer (634423)
Lambert Gwenhure (6195428)
Pious Makaya (6195431)
Wanda Markotter (392368)
Louis Nel (3706213)

January 2019

The scale bar depicts nucleotide substitutions per site (mean: 2,4E-4 substitutions/site) and all br...

Phylogenetic tree.

Julie Baby (773881)
Reeta Subramaniam Mani (773882)
Swapna Susan Abraham (773883)
Asha T. Thankappan (773884)
Prasad Madhavan Pillai (773885)
Ashwini Manoor Anand (773886)
Shampur Narayan Madhusudana (773887)
Jayachandran Ramachandran (773888)
Sachin Sreekumar (773889)

July 2015

Maximum likelihood phylogenetic tree was constructed with MEGA 5 software using nucleoprotein gen...

Time-line evolutionary analysis of rabies virus.

Kamruddin Ahmed (641913)
Phouvong Phommachanh (715423)
Phengphet Vorachith (715424)
Takashi Matsumoto (5861)
Pheophet Lamaningao (715425)
Daisuke Mori (458964)
Minako Takaki (715426)
Bounlom Douangngeun (715427)
Bounkhouang Khambounheuang (715428)
Akira Nishizono (464145)

March 2015

Bayesian maximum credibility tree representing the genealogy of rabies virus obtained by analyzin...

Daniel L. Horton (225460)
Lorraine M. McElhinney (370256)
Conrad M. Freuling (370255)
Denise A. Marston (370257)
Ashley C. Banyard (225470)
Hooman Goharrriz (712944)
Emma Wise (383378)
Andrew C. Breed (185310)
Greg Saturday (712945)
Jolanta Kolodziejek (210653)
Erika Zilahi (712946)
Muhannad F. Al-Kobaisi (712947)
Norbert Nowotny (210654)
Thomas Mueller (33067)
Anthony R. Fooks (44966)

March 2015

The maximum clade credibility tree was chosen using TreeAnnotator(v1.8.0) and visualised using Fi...

Map (a) and maximum clade credibility tree (b) of SCSK G gene sequences used in the study.

Natalia A. Kuzmina (156827)
Philippe Lemey (30422)
Ivan V. Kuzmin (156798)
Bonny C. Mayes (492309)
James A. Ellison (492310)
Lillian A. Orciari (156809)
Dillon Hightower (492311)
Steven T. Taylor (492312)
Charles E. Rupprecht (156842)

December 2013

Posterior probabilities are shown for key nodes, and timescale is present at the bottom. To show ...

Maximum clade credibility tree using host species as a discrete trait, using only sequences from viruses detected in wild canids or dogs.

Daniel L. Horton (225460)
Lorraine M. McElhinney (370256)
Conrad M. Freuling (370255)
Denise A. Marston (370257)
Ashley C. Banyard (225470)
Hooman Goharrriz (712944)
Emma Wise (383378)
Andrew C. Breed (185310)
Greg Saturday (712945)
Jolanta Kolodziejek (210653)
Erika Zilahi (712946)
Muhannad F. Al-Kobaisi (712947)
Norbert Nowotny (210654)
Thomas Mueller (33067)
Anthony R. Fooks (44966)

March 2015

Branches are coloured by the most probable host species (dogs or wildlife) of the progeny node, w...

Phylogenetic tree of complete and partial G genes from 235 Philippine rabies virus strains.

Mariko Saito (339975)
Hitoshi Oshitani (178316)
Jun Ryan C. Orbina (399416)
Kentaro Tohma (399417)
Alice S. de Guzman (399418)
Taro Kamigaki (178287)
Catalino S. Demetria (399419)
Daria L. Manalo (377565)
Akira Noguchi (399420)
Satoshi Inoue (221875)
Beatriz P. Quiambao (377607)

April 2013

The phylogenetic tree of 233 complete (1572 nt) and two partial (1549 nt) G genes was constructed...

Comparison between phylogenetic trees of rabies virus N and G genes.

Mariko Saito (339975)
Hitoshi Oshitani (178316)
Jun Ryan C. Orbina (399416)
Kentaro Tohma (399417)
Alice S. de Guzman (399418)
Taro Kamigaki (178287)
Catalino S. Demetria (399419)
Daria L. Manalo (377565)
Akira Noguchi (399420)
Satoshi Inoue (221875)
Beatriz P. Quiambao (377607)

April 2013

Comparison of rabies virus phylogenetic trees for the (A) partial N gene (1124 nt) and the (B) co...

Estimated phylogenetic relationship of Chinese isolates.

Zhenyang Guo (167627)
Xiaoyan Tao (167632)
Cuiping Yin (278386)
Na Han (167625)
Jinning Yu (167622)
Hao Li (31608)
Haizhou Liu (167629)
Wei Fang (116739)
James Adams (167630)
Jun Wang (5906)
Guodong Liang (167635)
Qing Tang (167623)
Simon Rayner (117650)

January 2013

Maximum clade credibility (MCC) tree of dataset 6 using 232 full length N gene sequences of Chine...

Phylogenetic tree of rabies virus full-length N gene (1353 bp), for both Moldova and north-eastern Romania, generated by PhyML and Seaview softwares.

Mihaela Anca Dascalu (16502885)
Evelyne Picard-Meyer (331154)
Emmanuelle Robardet (331148)
Alexandre Servat (572154)
Serghei Arseniev (16502888)
Oxana Groza (16502891)
Nicolae Starciuc (16502894)
Vlad Vuta (16502897)
Florica Barbuceanu (16492562)
Oana Irina Tanase (16502900)
Florentina Daraban Bocaneti (16502903)
Helene Quenault (9754690)
Edouard Hirchaud (204322)
Yannick Blanchard (577101)
Elena Velescu (8166210)
Florence Cliquet (331147)

July 2023

For Moldova, domestic animals (n = 13) are shown in purple triangles and the wild animal (n = 1) in ...

The maximum clade credibility tree was estimated by Bayesian analysis of nucleoprotein gene sequences with ∼450 bp of 466 measles virus strains.

Chengguo Wei (128335)
Jingwei Shi (128338)
Bin Liu (5899)
Yue Shi (128342)
Jingtong Zheng (128345)
Guangyu Xu (128347)
Jinshu Ma (128350)
Guoqing Wang (128352)
Fan Li (49953)

October 2012

The posterior probabilities of the key nodes are depicted above the respective nodes. Samples iso...

Phylogenetic tree of rabies virus whole genome for Moldova and north-eastern Romania, generated by PhyML and Seaview software.

Mihaela Anca Dascalu (16502885)
Evelyne Picard-Meyer (331154)
Emmanuelle Robardet (331148)
Alexandre Servat (572154)
Serghei Arseniev (16502888)
Oxana Groza (16502891)
Nicolae Starciuc (16502894)
Vlad Vuta (16502897)
Florica Barbuceanu (16492562)
Oana Irina Tanase (16502900)
Florentina Daraban Bocaneti (16502903)
Helene Quenault (9754690)
Edouard Hirchaud (204322)
Yannick Blanchard (577101)
Elena Velescu (8166210)
Florence Cliquet (331147)

July 2023

For Moldova, domestic animals (n = 6) are shown with purple triangles. For north-eastern Romania, do...

Maximum clade credibility tree of rabies viruses based on complete nucleoprotein (N) gene sequences.

Abstract

Extracted data

Maximum clade credibility tree of rabies viruses based on complete nucleoprotein (N) gene sequences.

Abstract

Extracted data

Topics

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Topics

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