Phylogenetic tree generated based on the 7 housekeeping genes in Colombian strains of H. pylori.

Neighbor joining phylogenetic tree generated using nucleotide sequences of the HPV-58 L2 gene.

Yaofei Yue (286744)
Hongying Yang (131218)
Kun Wu (286745)
Lijuan Yang (1538233)
Junying Chen (286746)
Xinwei Huang (286747)
Yue Pan (267516)
Youqing Ruan (286750)
Yujiao Zhao (286754)
Xinan Shi (286756)
Qiangming Sun (286760)
Qihan Li (130629)

February 2013

Study sequences are labeled in black. Others are standard sequences, including: D90400 (Japan), E...

Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Seiji Shiota (187575)
Rumiko Suzuki (187579)
Yuichi Matsuo (615311)
Muhammad Miftahussurur (615312)
Trang Thu Huyen Tran (615313)
Tran Thanh Binh (615314)
Yoshio Yamaoka (187580)

August 2014

<div>BackgroundA recent report has shown that the phylogenetic origin of Helicobacter p...

Phylogenomics of Colombian Helicobacter pylori isolates

Andrés Julián Gutiérrez-Escobar
Esperanza Trujillo
Orlando Acevedo
María Mercedes Bravo

September 2017

Abstract Background During the Spanish colonisation of South America, African slaves and Europeans a...

Phylogenetic tree of Helicobacter pylori nucleotide sequences, including the vacA m region.

Hafeza Aftab (4348747)
Muhammad Miftahussurur (615312)
Phawinee Subsomwong (829936)
Faruque Ahmed (4348744)
A. K. Azad Khan (4348750)
Takashi Matsumoto (5861)
Rumiko Suzuki (187579)
Yoshio Yamaoka (187580)

August 2017

Genetic distances were estimated using the six-parameter method, and phylogenetic trees were cons...

. An analysis of the H. pylori 16S rRNA gene sequences produced a neighbor-joining tree.

Tingxiu Yang (17935648)
Jia Li (160557)
Yuanyuan Zhang (101797)
Zhaohui Deng (4477453)
Guzhen Cui (5334140)
Jun Yuan (356273)
Jianchao Sun (7684151)
Xiaojuan Wu (300616)
Dengxiong Hua (17935651)
Song Xiang (2510860)
Zhenghong Chen (6084593)

February 2024

This phylogenetic tree was constructed using the GenBank reference sequence (H. pylori SS1) and H. p...

Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Seiji Shiota
Rumiko Suzuki
Yuichi Matsuo
Muhammad Miftahussurur
Trang Thu
Huyen Tran
Tran Thanh Binh
Yoshio Yamaoka

August 2016

Background: A recent report has shown that the phylogenetic origin of Helicobacter pylori based on m...

from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Shiota Seiji
Suzuki Rumiko
Matsuo Yuichi
Miftahussurur Muhammad
Tran Trang Thu Huyen
Binh Tran Thanh
Yamaoka Yoshio

August 2014

based on multi-locus sequence typing (MLST) was significantly associated with the severity of gastr...

Maximum likelihood phylogenetic trees of alpB and hofC genes.

Kaisa Thorell (3411728)
Koji Yahara (210105)
Elvire Berthenet (3775177)
Daniel J. Lawson (567208)
Jane Mikhail (3263613)
Ikuko Kato (190064)
Alfonso Mendez (3775174)
Cosmeri Rizzato (123153)
María Mercedes Bravo (3775180)
Rumiko Suzuki (187579)
Yoshio Yamaoka (187580)
Javier Torres (190044)
Samuel K. Sheppard (124129)
Daniel Falush (46436)

February 2017

Leaves are shaded according to geographical origin and the H. pylori population ass...

Phylogenetic tree of the 66 Colombian strains and 1,209 PubMLST strains.

Seiji Shiota (187575)
Rumiko Suzuki (187579)
Yuichi Matsuo (615311)
Muhammad Miftahussurur (615312)
Trang Thu Huyen Tran (615313)
Tran Thanh Binh (615314)
Yoshio Yamaoka (187580)

August 2014

MLST sequence datasets of 1,209 strains were obtained from PubMLST database (60 strains of hpAfri...

Phylogenetic trees of H. pylori genomes in the families.

Yoshikazu Furuta (210102)
Mutsuko Konno (739835)
Takako Osaki (455259)
Hideo Yonezawa (455258)
Taichiro Ishige (707299)
Misaki Imai (189465)
Yuh Shiwa (512008)
Mari Shibata-Hatta (512009)
Yu Kanesaki (739836)
Hirofumi Yoshikawa (231503)
Shigeru Kamiya (455262)
Ichizo Kobayashi (29889)

May 2015

The number of nucleotide substitutions was used as the distance matrix. The relation and age of t...

Evolutionary relationships among a global sample of H. pylori strains.

Ousman Secka (78111)
Yoshan Moodley (28753)
Martin Antonio (42317)
Douglas E. Berg (145091)
Mary Tapgun (338639)
Robert Walton (177664)
Archibald Worwui (643588)
Vivat Thomas (338640)
Tumani Corrah (20656)
Julian E. Thomas (338641)
Richard A. Adegbola (20657)

October 2014

The neighbor-joining tree was calculated from concatenated sequences of 246 globally representati...

Neighbor-Joining Tree Based on the GTR+G+I Evolutionary Model for 3,406 bp Sequences from 58 Strains of H. pylori and Four Strains of H. acinonychis

Mark Eppinger (78034)
Claudia Baar (274741)
Bodo Linz (165513)
Günter Raddatz (109578)
Christa Lanz (79178)
Heike Keller (274744)
Giovanna Morelli (245319)
Helga Gressmann (274745)
Mark Achtman (126786)
Stephan C Schuster (274746)

February 2013

The tree shows the phylogenetic relationships between H. acinonychis and populations within H....

Phylogenetic tree based on the ialB gene in 10 isolates from Cajamarca and 10 from Ancash and 17 genomes downloaded from the Genbank.

Yanina Zarate-Sulca (15910256)
Karen Daphne Calvay-Sanchez (15910253)
Víctor Jimenez-Vasquez (17124847)
Joaquim Ruiz (540485)
Oscar Acosta-Conchucos (17124850)
Giovanna Mendoza-Mujica (15910259)

October 2023

The construction of the tree used the NJ method with 1,000 replicates. The Bootstrap values are disp...

Phylogenetic networks among 30 H. pylori strains.

Ikuo Uchiyama (14388)
Jacob Albritton (3141237)
Masaki Fukuyo (3141240)
Kenji K. Kojima (207564)
Koji Yahara (210105)
Ichizo Kobayashi (29889)

August 2016

(A) From the concatenated alignment of the universal core OGs. (B) From the gene content (presenc...

Phylogenetic Structure (Neighbor-Joining Trees) According to (A) Sequences of Seven Core Genes, (B) Microarray Data Excluding cag PAI, and (C) Microarray Data Including the cag PAI for 56 Strains of H. pylori and Four Strains of H. acinonychis

Helga Gressmann (274745)
Bodo Linz (165513)
Rohit Ghai (20856)
Klaus-Peter Pleissner (275037)
Ralph Schlapbach (275038)
Yoshio Yamaoka (187580)
Christian Kraft (269160)
Sebastian Suerbaum (61077)
Thomas F Meyer (31623)
Mark Achtman (126786)

February 2013

Filled triangles indicate strains possessing the cag PAI, open circles indicate strains la...

Neighbor joining phylogenetic tree generated using nucleotide sequences of the HPV-58 L2 gene.

Yaofei Yue (286744)
Hongying Yang (131218)
Kun Wu (286745)
Lijuan Yang (1538233)
Junying Chen (286746)
Xinwei Huang (286747)
Yue Pan (267516)
Youqing Ruan (286750)
Yujiao Zhao (286754)
Xinan Shi (286756)
Qiangming Sun (286760)
Qihan Li (130629)

February 2013

Study sequences are labeled in black. Others are standard sequences, including: D90400 (Japan), E...

Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Seiji Shiota (187575)
Rumiko Suzuki (187579)
Yuichi Matsuo (615311)
Muhammad Miftahussurur (615312)
Trang Thu Huyen Tran (615313)
Tran Thanh Binh (615314)
Yoshio Yamaoka (187580)

August 2014

<div>BackgroundA recent report has shown that the phylogenetic origin of Helicobacter p...

Phylogenomics of Colombian Helicobacter pylori isolates

Andrés Julián Gutiérrez-Escobar
Esperanza Trujillo
Orlando Acevedo
María Mercedes Bravo

September 2017

Abstract Background During the Spanish colonisation of South America, African slaves and Europeans a...

Phylogenetic tree of Helicobacter pylori nucleotide sequences, including the vacA m region.

Hafeza Aftab (4348747)
Muhammad Miftahussurur (615312)
Phawinee Subsomwong (829936)
Faruque Ahmed (4348744)
A. K. Azad Khan (4348750)
Takashi Matsumoto (5861)
Rumiko Suzuki (187579)
Yoshio Yamaoka (187580)

August 2017

Genetic distances were estimated using the six-parameter method, and phylogenetic trees were cons...

. An analysis of the H. pylori 16S rRNA gene sequences produced a neighbor-joining tree.

Tingxiu Yang (17935648)
Jia Li (160557)
Yuanyuan Zhang (101797)
Zhaohui Deng (4477453)
Guzhen Cui (5334140)
Jun Yuan (356273)
Jianchao Sun (7684151)
Xiaojuan Wu (300616)
Dengxiong Hua (17935651)
Song Xiang (2510860)
Zhenghong Chen (6084593)

February 2024

This phylogenetic tree was constructed using the GenBank reference sequence (H. pylori SS1) and H. p...

Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Seiji Shiota
Rumiko Suzuki
Yuichi Matsuo
Muhammad Miftahussurur
Trang Thu
Huyen Tran
Tran Thanh Binh
Yoshio Yamaoka

August 2016

Background: A recent report has shown that the phylogenetic origin of Helicobacter pylori based on m...

from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Shiota Seiji
Suzuki Rumiko
Matsuo Yuichi
Miftahussurur Muhammad
Tran Trang Thu Huyen
Binh Tran Thanh
Yamaoka Yoshio

August 2014

based on multi-locus sequence typing (MLST) was significantly associated with the severity of gastr...

Maximum likelihood phylogenetic trees of alpB and hofC genes.

Kaisa Thorell (3411728)
Koji Yahara (210105)
Elvire Berthenet (3775177)
Daniel J. Lawson (567208)
Jane Mikhail (3263613)
Ikuko Kato (190064)
Alfonso Mendez (3775174)
Cosmeri Rizzato (123153)
María Mercedes Bravo (3775180)
Rumiko Suzuki (187579)
Yoshio Yamaoka (187580)
Javier Torres (190044)
Samuel K. Sheppard (124129)
Daniel Falush (46436)

February 2017

Leaves are shaded according to geographical origin and the H. pylori population ass...

Phylogenetic tree of the 66 Colombian strains and 1,209 PubMLST strains.

Seiji Shiota (187575)
Rumiko Suzuki (187579)
Yuichi Matsuo (615311)
Muhammad Miftahussurur (615312)
Trang Thu Huyen Tran (615313)
Tran Thanh Binh (615314)
Yoshio Yamaoka (187580)

August 2014

MLST sequence datasets of 1,209 strains were obtained from PubMLST database (60 strains of hpAfri...

Phylogenetic trees of H. pylori genomes in the families.

Yoshikazu Furuta (210102)
Mutsuko Konno (739835)
Takako Osaki (455259)
Hideo Yonezawa (455258)
Taichiro Ishige (707299)
Misaki Imai (189465)
Yuh Shiwa (512008)
Mari Shibata-Hatta (512009)
Yu Kanesaki (739836)
Hirofumi Yoshikawa (231503)
Shigeru Kamiya (455262)
Ichizo Kobayashi (29889)

May 2015

The number of nucleotide substitutions was used as the distance matrix. The relation and age of t...

Evolutionary relationships among a global sample of H. pylori strains.

Ousman Secka (78111)
Yoshan Moodley (28753)
Martin Antonio (42317)
Douglas E. Berg (145091)
Mary Tapgun (338639)
Robert Walton (177664)
Archibald Worwui (643588)
Vivat Thomas (338640)
Tumani Corrah (20656)
Julian E. Thomas (338641)
Richard A. Adegbola (20657)

October 2014

The neighbor-joining tree was calculated from concatenated sequences of 246 globally representati...

Neighbor-Joining Tree Based on the GTR+G+I Evolutionary Model for 3,406 bp Sequences from 58 Strains of H. pylori and Four Strains of H. acinonychis

Mark Eppinger (78034)
Claudia Baar (274741)
Bodo Linz (165513)
Günter Raddatz (109578)
Christa Lanz (79178)
Heike Keller (274744)
Giovanna Morelli (245319)
Helga Gressmann (274745)
Mark Achtman (126786)
Stephan C Schuster (274746)

February 2013

The tree shows the phylogenetic relationships between H. acinonychis and populations within H....

Phylogenetic tree based on the ialB gene in 10 isolates from Cajamarca and 10 from Ancash and 17 genomes downloaded from the Genbank.

Yanina Zarate-Sulca (15910256)
Karen Daphne Calvay-Sanchez (15910253)
Víctor Jimenez-Vasquez (17124847)
Joaquim Ruiz (540485)
Oscar Acosta-Conchucos (17124850)
Giovanna Mendoza-Mujica (15910259)

October 2023

The construction of the tree used the NJ method with 1,000 replicates. The Bootstrap values are disp...

Phylogenetic networks among 30 H. pylori strains.

Ikuo Uchiyama (14388)
Jacob Albritton (3141237)
Masaki Fukuyo (3141240)
Kenji K. Kojima (207564)
Koji Yahara (210105)
Ichizo Kobayashi (29889)

August 2016

(A) From the concatenated alignment of the universal core OGs. (B) From the gene content (presenc...

Phylogenetic Structure (Neighbor-Joining Trees) According to (A) Sequences of Seven Core Genes, (B) Microarray Data Excluding cag PAI, and (C) Microarray Data Including the cag PAI for 56 Strains of H. pylori and Four Strains of H. acinonychis

Helga Gressmann (274745)
Bodo Linz (165513)
Rohit Ghai (20856)
Klaus-Peter Pleissner (275037)
Ralph Schlapbach (275038)
Yoshio Yamaoka (187580)
Christian Kraft (269160)
Sebastian Suerbaum (61077)
Thomas F Meyer (31623)
Mark Achtman (126786)

February 2013

Filled triangles indicate strains possessing the cag PAI, open circles indicate strains la...

Neighbor joining phylogenetic tree generated using nucleotide sequences of the HPV-58 L2 gene.

Yaofei Yue (286744)
Hongying Yang (131218)
Kun Wu (286745)
Lijuan Yang (1538233)
Junying Chen (286746)
Xinwei Huang (286747)
Yue Pan (267516)
Youqing Ruan (286750)
Yujiao Zhao (286754)
Xinan Shi (286756)
Qiangming Sun (286760)
Qihan Li (130629)

February 2013

Study sequences are labeled in black. Others are standard sequences, including: D90400 (Japan), E...

Helicobacter pylori from Gastric Cancer and Duodenal Ulcer Show Same Phylogeographic Origin in the Andean Region in Colombia

Seiji Shiota (187575)
Rumiko Suzuki (187579)
Yuichi Matsuo (615311)
Muhammad Miftahussurur (615312)
Trang Thu Huyen Tran (615313)
Tran Thanh Binh (615314)
Yoshio Yamaoka (187580)

August 2014

<div>BackgroundA recent report has shown that the phylogenetic origin of Helicobacter p...

Phylogenomics of Colombian Helicobacter pylori isolates

Andrés Julián Gutiérrez-Escobar
Esperanza Trujillo
Orlando Acevedo
María Mercedes Bravo

September 2017

Abstract Background During the Spanish colonisation of South America, African slaves and Europeans a...

Phylogenetic tree generated based on the 7 housekeeping genes in Colombian strains of <i>H. pylori</i>.

Abstract

Extracted data

Phylogenetic tree generated based on the 7 housekeeping genes in Colombian strains of <i>H. pylori</i>.

Abstract

Extracted data

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