DNA methylation and H3K9me2 levels of genic transposons.
- Patrick T. West (615408)
- Qing Li (84975)
- Lexiang Ji (615409)
- Steven R. Eichten (112989)
- Jawon Song (615410)
- Matthew W. Vaughn (113009)
- Robert J. Schmitz (227029)
- Nathan M. Springer (102520)
Publication date
August 2014
DOIAbstract
<p>(A) An example of a transposable element insertion located within an intron of a maize gene is shown using Integrated Genome Viewer <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0105267#pone.0105267-Robinson1" target="_blank">[48]</a>. The H3K9me2 ChIP-seq read count is shown in red. The levels of CG, CHG and CHH methylation (per 100 bp tile) are shown in blue. (B) The average CG, CHG and CHH DNA methylation levels are shown for all TEs (orange), genic TEs (blue) and exons (maroon). (C) The average H3K9me2 read counts are shown for the same regions. (D) The profile of DNA methylation and H3K9me2 over genic TEs is shown.</p
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