Molecular Phylogeography and Population Genetic Structure of <i>O. longilobus</i> and <i>O. taihangensis</i> (<i>Opisthopappus</i>) on the Taihang Mountains

<div><p>Historic events such as the uplift of mountains and climatic oscillations in the Quaternary periods greatly affected the evolution and modern distribution of the flora. We sequenced the <i>trn</i>L–<i>trn</i>F, <i>ndh</i>J-<i>trn</i>L and ITS from populations throughout the known distributions of <i>O. longilobus</i> and <i>O. taihangensis</i> to understand the evolutionary history and the divergence related to the past shifts of habitats in the Taihang Mountains regions. The results showed high genetic diversity and pronounced genetic differentiation among the populations of the two species with a significant phylogeographical pattern (<i>N</i>_ST><i>G</i>_ST, <i>P</i><0.05), which imply restricted gene flow among the populations and significant geographical or environmental isolation. Ten chloroplast DNA (cpDNA) and eighteen nucleus ribosome DNA (nrDNA) haplotypes were identified and clustered into two lineages. Two corresponding refuge areas were revealed across the entire distribution ranges of <i>O. longilobus</i> and at least three refuge areas for <i>O. taihangensis</i>. <i>O. longilobus</i> underwent an evolutionary historical process of long-distance dispersal and colonization, whereas <i>O. taihangensis</i> underwent a population expansion before the main uplift of Taihang Mountains. The differentiation time between <i>O. longilobus</i> and <i>O. taihangensis</i> is estimated to have occurred at the early Pleistocene. Physiographic complexity and paleovegetation transition of Taihang Mountains mainly shaped the specific formation and effected the present distribution of these two species. The results therefore support the inference that Quaternary refugial isolation promoted allopatric speciation in Taihang Mountains. This may help to explain the existence of high diversity and endemism of plant species in central/northern China.</p>