<p>The (<b>a</b>) precision and (<b>b</b>) recall are illustrated for several protocols for identifying reads originating from KO genes when the strain from which the reads originated is absent from the database. Genomes are ordered by their precision and recall, respectively, using the <i>top gene</i> protocol.</p
<p>All numbers were normalized against the corresponding numbers obtained with NCBI's BLAST. As expe...
Reciprocal Best Hits (RBH) are a common proxy for orthology in comparative genomics. Essentially, a ...
The statistical estimates of BLAST and PSI-BLAST are of extreme importance to determine the biologi...
<p>(<b>a</b>) The probability function of predicting the copy number of a given KO in a given datase...
<p>The phylogenetic tree was obtained from Ref. <a href="http://www.plosone.org/article/info:doi/10....
<p>(<b>a</b>) Simulated sets of reads of length L are generated from curated and annotated reference...
Background: As the number of genomes in public databases increases, it becomes more important to be ...
<p>The estimate consists on false negatives (a paralog conserved next to a RBH) divided by the sum o...
Curated BLAST for Genomes finds candidate genes for a process or an enzymatic activity within a geno...
The region. The region. The 'evaluation' track refers to text-based hits extracted from papers with ...
The Basic Local Alignment Search Tool (BLAST) [ ] algorithm is one of the most commonly used algorit...
<p>Representative sequences from all the 8,099 HGCs were subjected to annotation out of which 47.77%...
<p>(A) Blast2Go functional annotation results overview. No Blast, Number of sequences without blast ...
“Curated BLAST for Genomes” finds candidate genes for a process or an enzymatic activity within a ge...
<p>Note:</p>1<p>presents the unigenes annotated by whole protein sequences using blastx,</p>2<p>pres...
<p>All numbers were normalized against the corresponding numbers obtained with NCBI's BLAST. As expe...
Reciprocal Best Hits (RBH) are a common proxy for orthology in comparative genomics. Essentially, a ...
The statistical estimates of BLAST and PSI-BLAST are of extreme importance to determine the biologi...
<p>(<b>a</b>) The probability function of predicting the copy number of a given KO in a given datase...
<p>The phylogenetic tree was obtained from Ref. <a href="http://www.plosone.org/article/info:doi/10....
<p>(<b>a</b>) Simulated sets of reads of length L are generated from curated and annotated reference...
Background: As the number of genomes in public databases increases, it becomes more important to be ...
<p>The estimate consists on false negatives (a paralog conserved next to a RBH) divided by the sum o...
Curated BLAST for Genomes finds candidate genes for a process or an enzymatic activity within a geno...
The region. The region. The 'evaluation' track refers to text-based hits extracted from papers with ...
The Basic Local Alignment Search Tool (BLAST) [ ] algorithm is one of the most commonly used algorit...
<p>Representative sequences from all the 8,099 HGCs were subjected to annotation out of which 47.77%...
<p>(A) Blast2Go functional annotation results overview. No Blast, Number of sequences without blast ...
“Curated BLAST for Genomes” finds candidate genes for a process or an enzymatic activity within a ge...
<p>Note:</p>1<p>presents the unigenes annotated by whole protein sequences using blastx,</p>2<p>pres...
<p>All numbers were normalized against the corresponding numbers obtained with NCBI's BLAST. As expe...
Reciprocal Best Hits (RBH) are a common proxy for orthology in comparative genomics. Essentially, a ...
The statistical estimates of BLAST and PSI-BLAST are of extreme importance to determine the biologi...
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